Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq22 167 5e-36 seq11 163 7e-35 >seq22 Length=1908885 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || |||||||| || || | ||||||| ||||| Sbjct 1644168 AGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCC 1644109 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||||||||| ||||| || ||||| || |||| || ||||||||| Sbjct 1644108 TCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 1644049 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||| ||||| || || ||||| || ||||| ||| Sbjct 1644048 TGGATCTTGCTCTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 1643989 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 1643988 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1643957 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || || ||||| || |||| || |||| |||||| Sbjct 662446 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCCATCT 662505 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| ||||| || ||||| || |||||||| |||| || ||||||||| Sbjct 662506 TCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCC 662565 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| ||||| || ||| || || || || |||||| Sbjct 662566 TGAATCTTCGACTTGACGTTGTCGATTGTGTCCGAAGATTCCACTTCCAGCGTAATCGTC 662625 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 662626 TTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| ||||| || |||||||| || || | |||||| | ||||| Sbjct 662902 AGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 662961 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 662962 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 663021 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| ||||| || || |||||||||||||| ||| Sbjct 663022 TGAATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTC 663081 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | ||||| Sbjct 663082 TTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 663113 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | || |||| || || Sbjct 662674 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGACAGTGTCCGGCCGTCC 662733 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| ||||| || ||||| || ||||| ||||| | || |||||||| Sbjct 662734 TCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCT 662793 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| |||||||| ||||| || | || |||||| Sbjct 662794 TGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAACTTCCAACGTAATCGTC 662853 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | ||||| Sbjct 662854 TTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 663130 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCC 663189 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 663190 TCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 663249 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || ||||| || || || ||||| || ||||| ||| Sbjct 663250 TGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCGACCTCAAGGGTGATGGTC 663309 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 663310 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 663341 >seq11 Length=5116797 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | || |||| ||||| Sbjct 2814761 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCC 2814820 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || |||||||| || | || ||||||||| Sbjct 2814821 TCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 2814880 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||| || |||||||| ||||| ||| Sbjct 2814881 TGGATCTTGCTCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 2814940 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || |||||||| ||||| || || Sbjct 2814941 TTGCCCGTGAGGGTCTTCACGAA 2814963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151361379695