Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq11 93.3 3e-14
seq22 86.0 4e-12
>seq11
Length=5116797
Score = 93.3 bits (102), Expect = 3e-14
Identities = 136/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 23619 TTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGT 23678
|||||| || ||||||||||| || || ||||| ||||| || || ||| ||||||| |
Sbjct 2814964 TTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 2814905
Query 23679 TGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTT 23737
|| ||| | || | || || ||||| || || | ||||| || || ||||||
Sbjct 2814904 CGACAATGTCAAGA-GCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTC 2814846
Query 23738 TAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAA 23797
| || ||||| ||||| || || || || | || || | ||| |||||||| || |
Sbjct 2814845 TGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAGA 2814786
Query 23798 AAGAGTCCAC 23807
| ||||||||
Sbjct 2814785 AGGAGTCCAC 2814776
>seq22
Length=1908885
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || ||||| ||||| || ||||| || || ||||| || || ||
Sbjct 662657 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACGCTGGAAGTGGAATCTTCG 662598
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || ||| ||||| || || | ||||| || ||
Sbjct 662597 GACACAATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAG 662538
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| | || || || ||||| || ||||||| | || || | || ||||||
Sbjct 662537 CAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAAGATGGCCGGACGCTGTCGGACTACAAC 662478
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 662477 ATTCAGAAGGAGTCGAC 662461
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || || ||||| || || || ||||||||||| || || || |
Sbjct 663113 ATGCAAATCTTTGTCAAGACACTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 663054
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || ||| ||||| || || | |||||||| ||
Sbjct 663053 GACACGATCGACAATGTCAAGA-GCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCA 662995
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || ||||| ||||| || || || || | ||||| | ||| |||||
Sbjct 662994 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAA 662935
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 662934 CATCCAGAAGGAGTCTAC 662917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009422861844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |