Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq41 120 4e-22
>seq41
Length=3900177
Score = 120 bits (132), Expect = 4e-22
Identities = 369/562 (66%), Gaps = 18/562 (3%)
Strand=Plus/Plus
Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972
||| | |||| ||||| || || || | |||| ||| || | |||||| || |||
Sbjct 918095 GTACAGAGCC--TCAAACTCCTCGCCGTAGCAATCAGCCAGGCCGGCGCATTCGTTGGGG 918152
Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032
||||||| | ||| || || | | || || || ||||| || || || || |||||
Sbjct 918153 CACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCGGGGATCCAG 918212
Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092
|| || | || ||||| |||| | || || || ||| ||||| || |||
Sbjct 918213 AGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTCTTCCGCAGGTCG 918272
Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAA--CTCCAGGTC 78150
|| ||||| | | ||| | |||||| || || | || || || || | || || |
Sbjct 918273 AGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATG--CAGAATGCACCGGGCC 918330
Query 78151 GTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAA 78210
| || || || |||||||| | || | ||| ||||| || | || | | ||| || |
Sbjct 918331 GCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACACGAAGCATGGGGA 918390
Query 78211 TAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTAC 78270
| || ||||| ||||| || || || || | ||| ||| || | || ||||| |
Sbjct 918391 TGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAGCACGAATGCGA- 918449
Query 78271 TAATGGATATCC----CTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT-TTCAA 78325
|||| || | | || || || ||| |||| || || | || || ||| || |
Sbjct 918450 ---TGGACATTCAGACCGATGCCACCAGCCGTCTTGGAGATCATGGCACA-CGTCTTGAG 918505
Query 78326 TGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACAT 78385
|| |||||||| ||||| || || |||||| |||||| | || || ||| ||||
Sbjct 918506 CGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAAGCAGGAGGACAG 918565
Query 78386 TTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCA-TTTTT 78444
||| || || || || || || | ||||| || ||||||||||| | || ||
Sbjct 918566 CTGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAGAACTTGTT 918625
Query 78445 CAGAAAGTAGATTGTATGTTTC 78466
| | |||| |||||||| ||
Sbjct 918626 CGACATGTAG-TTGTATGTCTC 918646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694668426615520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |