Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq41 120 4e-22 >seq41 Length=3900177 Score = 120 bits (132), Expect = 4e-22 Identities = 369/562 (66%), Gaps = 18/562 (3%) Strand=Plus/Plus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||| | |||| ||||| || || || | |||| ||| || | |||||| || ||| Sbjct 918095 GTACAGAGCC--TCAAACTCCTCGCCGTAGCAATCAGCCAGGCCGGCGCATTCGTTGGGG 918152 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||||| | ||| || || | | || || || ||||| || || || || ||||| Sbjct 918153 CACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCGGGGATCCAG 918212 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092 || || | || ||||| |||| | || || || ||| ||||| || ||| Sbjct 918213 AGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTCTTCCGCAGGTCG 918272 Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAA--CTCCAGGTC 78150 || ||||| | | ||| | |||||| || || | || || || || | || || | Sbjct 918273 AGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATG--CAGAATGCACCGGGCC 918330 Query 78151 GTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAA 78210 | || || || |||||||| | || | ||| ||||| || | || | | ||| || | Sbjct 918331 GCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACACGAAGCATGGGGA 918390 Query 78211 TAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTAC 78270 | || ||||| ||||| || || || || | ||| ||| || | || ||||| | Sbjct 918391 TGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAGCACGAATGCGA- 918449 Query 78271 TAATGGATATCC----CTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT-TTCAA 78325 |||| || | | || || || ||| |||| || || | || || ||| || | Sbjct 918450 ---TGGACATTCAGACCGATGCCACCAGCCGTCTTGGAGATCATGGCACA-CGTCTTGAG 918505 Query 78326 TGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACAT 78385 || |||||||| ||||| || || |||||| |||||| | || || ||| |||| Sbjct 918506 CGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAAGCAGGAGGACAG 918565 Query 78386 TTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCA-TTTTT 78444 ||| || || || || || || | ||||| || ||||||||||| | || || Sbjct 918566 CTGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAGAACTTGTT 918625 Query 78445 CAGAAAGTAGATTGTATGTTTC 78466 | | |||| |||||||| || Sbjct 918626 CGACATGTAG-TTGTATGTCTC 918646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668426615520