Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq41 129 8e-25 >seq41 Length=3900177 Score = 129 bits (142), Expect = 8e-25 Identities = 450/693 (65%), Gaps = 12/693 (2%) Strand=Plus/Plus Query 76540 ATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAAC 76599 |||| ||| || | ||||| || || ||||||| | |||||| || | | || || Sbjct 918125 ATCAGCCAGGCCGGCGCATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCAC 918184 Query 76600 CCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTC 76659 || ||||| || || || || ||||| || || | || ||||| |||| | || Sbjct 918185 ACGCTTCATGAACAGGTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTC 918244 Query 76660 TTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTC 76719 || || ||| ||||| || || |||||||| | | ||| | |||||| || || Sbjct 918245 CTCCTTGCCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTC 918304 Query 76720 TAGATATATCGCCATAA--CACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCA 76777 | || || || || |||| || || || || || |||||||| | || | ||| Sbjct 918305 CAAGTAGATG--CAGAATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCC 918362 Query 76778 GTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAA 76837 ||||| || | || | | ||| || || |||||||| ||||| || || || || | | Sbjct 918363 GTGTTGTTGAAGACACGAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCA 918422 Query 76838 ATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTA 76897 || ||| || |||||||| | | | || || || || || ||| | || Sbjct 918423 ATGTAAGAGCCGGTAGCACGAATGCGATGGACATTCAGACCGATGCCACCAGCCGTCTTG 918482 Query 76898 GAGATTAGAGCACAGCGT-TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT 76956 ||||| | ||||| ||| || | ||||| ||||||||||| || ||||||||| |||| Sbjct 918483 GAGATCATGGCACA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCAT 918541 Query 76957 GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGG 77016 || | || || ||| |||| ||| || || || || || || | || || Sbjct 918542 GTCTACGAGGAAGCAGGAGGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGG 918601 Query 77017 AGATGCATGAGTGAACCA-TTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTA 77075 || ||||| || || | || ||| | |||| |||||||| || | ||| || | Sbjct 918602 CGAGGCATGCGTAAAGAACTTGTTCGACATGTAG-TTGTATGTCTCGACAACACGCTCCA 918660 Query 77076 TATCCCATTG--ATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTAC 77133 || ||| | || || || || || ||||| | ||| ||||| || || || || Sbjct 918661 CAT--CATCGCCCCAGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGAC 918718 Query 77134 AGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 77193 ||||| || | || | | ||| || |||| || || || ||||| || | Sbjct 918719 GATCTTACCATCGAGCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTATTG 918778 Query 77194 GTATGAAAAGTCTCTTTCGTAAATAATAACCGA 77226 ||| ||||| | ||||| | ||| |||| Sbjct 918779 GTAGTTGAAGTCCCGGTCGTAGACAATGGCCGA 918811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934016797760