Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq41 129 8e-25
>seq41
Length=3900177
Score = 129 bits (142), Expect = 8e-25
Identities = 450/693 (65%), Gaps = 12/693 (2%)
Strand=Plus/Plus
Query 76540 ATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAAC 76599
|||| ||| || | ||||| || || ||||||| | |||||| || | | || ||
Sbjct 918125 ATCAGCCAGGCCGGCGCATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCAC 918184
Query 76600 CCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTC 76659
|| ||||| || || || || ||||| || || | || ||||| |||| | ||
Sbjct 918185 ACGCTTCATGAACAGGTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTC 918244
Query 76660 TTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTC 76719
|| || ||| ||||| || || |||||||| | | ||| | |||||| || ||
Sbjct 918245 CTCCTTGCCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTC 918304
Query 76720 TAGATATATCGCCATAA--CACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCA 76777
| || || || || |||| || || || || || |||||||| | || | |||
Sbjct 918305 CAAGTAGATG--CAGAATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCC 918362
Query 76778 GTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAA 76837
||||| || | || | | ||| || || |||||||| ||||| || || || || | |
Sbjct 918363 GTGTTGTTGAAGACACGAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCA 918422
Query 76838 ATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTA 76897
|| ||| || |||||||| | | | || || || || || ||| | ||
Sbjct 918423 ATGTAAGAGCCGGTAGCACGAATGCGATGGACATTCAGACCGATGCCACCAGCCGTCTTG 918482
Query 76898 GAGATTAGAGCACAGCGT-TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT 76956
||||| | ||||| ||| || | ||||| ||||||||||| || ||||||||| ||||
Sbjct 918483 GAGATCATGGCACA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCAT 918541
Query 76957 GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGG 77016
|| | || || ||| |||| ||| || || || || || || | || ||
Sbjct 918542 GTCTACGAGGAAGCAGGAGGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGG 918601
Query 77017 AGATGCATGAGTGAACCA-TTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTA 77075
|| ||||| || || | || ||| | |||| |||||||| || | ||| || |
Sbjct 918602 CGAGGCATGCGTAAAGAACTTGTTCGACATGTAG-TTGTATGTCTCGACAACACGCTCCA 918660
Query 77076 TATCCCATTG--ATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTAC 77133
|| ||| | || || || || || ||||| | ||| ||||| || || || ||
Sbjct 918661 CAT--CATCGCCCCAGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGAC 918718
Query 77134 AGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 77193
||||| || | || | | ||| || |||| || || || ||||| || |
Sbjct 918719 GATCTTACCATCGAGCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTATTG 918778
Query 77194 GTATGAAAAGTCTCTTTCGTAAATAATAACCGA 77226
||| ||||| | ||||| | ||| ||||
Sbjct 918779 GTAGTTGAAGTCCCGGTCGTAGACAATGGCCGA 918811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712934016797760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |