Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq22 114 3e-20 seq11 107 4e-18 >seq22 Length=1908885 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || ||||||||||| || ||||||||||| |||| | || | ||||| Sbjct 662901 GAGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATC 662960 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | ||||||||| | || ||| || ||||| || Sbjct 662961 CTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC 663020 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || |||||| | || | |||| || ||| || || ||||| || || Sbjct 663021 CTGAATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGT 663080 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| || |||| ||||| Sbjct 663081 CTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 663113 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || || || || ||||| || ||||||||||| |||| | || | Sbjct 663123 GAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 663182 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || | || || || ||||| || | ||||||||| | || ||| || || Sbjct 663183 ACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTC 663242 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || ||||| | || | | | || ||| ||| || ||||| || Sbjct 663243 CTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCGACCTCAAGGGT 663302 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||| ||||||| |||||| Sbjct 663303 GATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 663341 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| |||| | || | ||||| || || || || ||||| Sbjct 1644148 CTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCGAA 1644089 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | ||||||||| | | || || ||||| || || || || |||||| | Sbjct 1644088 GATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATT 1644029 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | |||| || ||| || ||||| || ||||| |||||||| || ||||| || Sbjct 1644028 GTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGAC 1643969 Query 152093 GAAGACCTGCAT 152104 ||||| |||||| Sbjct 1643968 GAAGATCTGCAT 1643957 >seq11 Length=5116797 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || ||||||||||| |||| | || | ||||| Sbjct 2814760 GAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATC 2814819 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | ||||||||| | || ||| || ||||| || Sbjct 2814820 CTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 2814879 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | | |||| || ||| || || || || || || Sbjct 2814880 CTGGATCTTGCTCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGT 2814939 Query 152072 TTTGCCCGTGAGAGTCTTCACGAA 152095 ||||||||||| ||||||||||| Sbjct 2814940 CTTGCCCGTGAGGGTCTTCACGAA 2814963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820164316853