Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq22 150 1e-31 seq11 131 1e-25 >seq22 Length=1908885 Score = 150 bits (166), Expect = 1e-31 Identities = 164/216 (76%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||||||| |||||||||||||| ||||||||||| |||| || || | || Sbjct 1644169 CAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATC 1644110 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||||| || || ||||||| |||||||| |||| || | || ||||| || Sbjct 1644109 CTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 1644050 Query 44245 CGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 | ||||| ||| || ||| | || ||||||| || |||||||| | || || Sbjct 1644049 CTGGATCTTGCTCTTGACATTGT--CGATAGTGTCGGACGACTCCACCTCAAGGGTGATA 1643992 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||||| |||||||| |||||||| |||||| Sbjct 1643991 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 1643956 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || ||| |||||| ||||||||||| |||| ||| ||| |||| || Sbjct 663132 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTC 663191 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || |||||||||| |||||||| |||| || | || ||||| ||| Sbjct 663192 CAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTG 663251 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | ||||| |||| || || ||||| | || || ||||| Sbjct 663252 AATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCGACCTCAAGGGTGATGGTCTT 663311 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || ||||| ||||| |||||||| ||||||||| Sbjct 663312 GCCGGTGAGCGTCTTGACGAAGATCTGCATGATG 663345 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||| ||| ||||| |||||| ||||||||||| || Sbjct 662655 CATACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 662714 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || |||| ||||||||||| || || || |||| |||||||| || | Sbjct 662715 AGACAGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGG 662774 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||| ||||| || |||||| ||| | | | || ||||| | || || Sbjct 662775 AGGGATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTC 662834 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| |||||||||||| || ||||| ||||| || ||||||||||| Sbjct 662835 AACTTCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| ||||| |||||| || |||||||| || | Sbjct 662431 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAC 662490 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || |||| |||||| || || || |||| |||||||| || | || Sbjct 662491 AGCGTCCGGCCATCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGA 662550 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| |||||| ||| | | | || ||||| | |||||||| Sbjct 662551 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATTGTGTCCGAAGATTCCACT 662610 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| |||||||||||| ||||| |||||||| ||||| || ||||| Sbjct 662611 TCCAGCGTAATCGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || || |||||| ||||||||||| |||| || ||| | || || Sbjct 662905 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCG 662964 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| |||||||| |||| || | || ||||| ||| Sbjct 662965 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGA 663024 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || ||||||| || || ||||| | || || |||| Sbjct 663025 ATCTTGCTCTTGACATTGT--CGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCT 663082 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| ||||| || ||||||||||| Sbjct 663083 TGCCGGTGAGTGTCTTGACAAAGATTTGCAT 663113 >seq11 Length=5116797 Score = 131 bits (144), Expect = 1e-25 Identities = 152/203 (75%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || ||| |||||| ||||||||||| |||| || || | || || Sbjct 2814763 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTC 2814822 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||||| ||||||||| || | || | || ||||| ||| Sbjct 2814823 GAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 2814882 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||| | ||| || ||||| | || || ||| Sbjct 2814883 GATCTTGCTCTTGACATTGT--CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 2814940 Query 44306 TTTCCCGTGAGGGTCTTCACGAA 44328 || |||||||||||||||||||| Sbjct 2814941 TTGCCCGTGAGGGTCTTCACGAA 2814963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990211342531