Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq11 152 1e-31 seq22 140 8e-28 seq39 84.2 5e-11 >seq11 Length=5116797 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177923 CCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGA 177982 ||| | ||||||||| || ||||| || || || |||||||||||||| || ||| || Sbjct 2814970 CCATAGTTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGA 2814911 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 2814910 CACCATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCA 2814851 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || || ||||| || || || |||||||| ||||| |||| || |||| || ||| | Sbjct 2814850 GCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACAT 2814791 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || || || || || || || || Sbjct 2814790 CCAGAAGGAGTCCACCCTCCACCTGGT 2814764 >seq22 Length=1908885 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || || || ||||| |||||||| || || ||| Sbjct 663110 CAAATCTTTGTCAAGACACTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGAC 663051 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || ||||| || |||||||| Sbjct 663050 ACGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAGCAG 662991 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| ||||| | || ||| |||| || ||| || Sbjct 662990 CGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATC 662931 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 662930 CAGAAGGAGTCTACTCTCCACCTGGTT 662904 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || ||||| || || || |||||| || ||| Sbjct 662654 CAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACGCTGGAAGTGGAATCTTCGGAC 662595 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || || || || |||||||| Sbjct 662594 ACAATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAGCAG 662535 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||| | |||||||| |||| || | || || ||| | Sbjct 662534 CGCCTGATTTTCGCGGGCAAGCAGTTGGAAGATGGCCGGACGCTGTCGGACTACAACATT 662475 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 662474 CAGAAGGAGTCGACGCTGCACCTGGT 662449 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| ||||| || || || Sbjct 663338 CAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCCGAT 663279 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| || || ||||| || |||||||| Sbjct 663278 ACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAGCAG 663219 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | || || || | || || |||| || ||| || Sbjct 663218 CGCCTGATCTTTGCTGGCAAGCAGTTGGAGGACGGTCGCACCCTCTCCGACTACAACATC 663159 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 663158 CAGAAGGAGTCCACCCTCCACCTGGT 663133 >seq39 Length=779030 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 177996 GTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 ||||| ||| ||| ||||||||||| || ||||| ||||||||||||||||| | | Sbjct 419763 GTCAAGGAAATGATCCAGGACAAAGAGGGCATCCCGCCGGACCAGCAACGACTACTTTAT 419704 Query 178056 GCCGGAAAACAGCTCGAAGATGGAAGGAC 178084 | || |||||||| |||||||| ||||| Sbjct 419703 GATGGCAAACAGCTGGAAGATGGCAGGAC 419675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730536819342