Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq22 188 7e-43
seq11 118 1e-21
>seq22
Length=1908885
Score = 188 bits (208), Expect = 7e-43
Identities = 182/232 (78%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| || || || || | |||||| || ||||||||||||||||| ||||| |||||||
Sbjct 1644185 CGCCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGG 1644126
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
| ||||| || | || || ||||||||||| ||||| ||||||||||| ||||| | ||
Sbjct 1644125 ACAGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGG 1644066
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTC 41811
||| || |||||||||| ||| || ||| || | || | ||||||| ||||||
Sbjct 1644065 GAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG--ATAGTGTCGGACGACTC 1644008
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||||| | || || || || |||||||| ||||| ||||| |||||||||
Sbjct 1644007 CACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 1643956
Score = 172 bits (190), Expect = 5e-38
Identities = 177/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | |||||| |||||||| ||||||||||||||| ||||| ||
Sbjct 662430 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGA 662489
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || | || || | ||||||||| ||||| ||||||||||| ||||| | ||
Sbjct 662490 CAGCGTCCGGCCATCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGG 662549
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| || |||||||||| ||| | || | | ||| | | | ||||| || ||||
Sbjct 662550 AATGCCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCGATTGTGTCCGAAGATTCCA 662608
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| |||| ||| ||||| ||||||||||| ||||| ||||||||||||||
Sbjct 662609 CTTCCAGCGTAATCGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657
Score = 154 bits (170), Expect = 1e-32
Identities = 173/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | |||||| || || ||| ||||||||| ||||| |||||||||
Sbjct 663115 CCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 663174
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || | ||||||||| || || ||||||||||| ||||| | ||
Sbjct 663175 AGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 663234
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| | || | | ||| | | | || ||| ||||| ||
Sbjct 663235 ATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCGAC 663293
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||| | || || || || || || |||||||| ||||| |||||||||
Sbjct 663294 CTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATG 663342
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| |||||||| ||||||||| ||||| ||||| ||
Sbjct 662659 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAC 662718
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| || ||||||||||| ||||| ||||||||||| ||||| | ||
Sbjct 662719 AGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 662778
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| ||| || ||| ||| | | | ||||| |||||| ||
Sbjct 662779 ATACCCTCCTTGTCTTGGATCTTCGACTT-TACGTTGTCGATTGTGTCAGACGACTCAAC 662837
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| ||| ||||| || || || || ||||| || || || |||||
Sbjct 662838 TTCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885
Score = 123 bits (136), Expect = 2e-23
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || || ||||||||| ||||| ||||||||
Sbjct 662887 CCACCACGCAGGCGGAGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAA 662946
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||||||||| || || ||||||||||| ||||| | ||
Sbjct 662947 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 663006
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| || || ||| || | || | |||||| |||||| |
Sbjct 663007 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCG--ATCGTGTCGGACGACTCGA 663064
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || || || || || ||||| || || || |||||
Sbjct 663065 CCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 663113
>seq11
Length=5116797
Score = 118 bits (130), Expect = 1e-21
Identities = 160/221 (72%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||||| || || ||| ||||||||| ||||| ||||||||
Sbjct 2814746 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2814805
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || |||||||||||||| || || ||||| ||||| ||||| | ||
Sbjct 2814806 AGCGTCCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 2814865
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | ||||| ||||| |
Sbjct 2814866 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG--ATGGTGTCCGAGGACTCGA 2814923
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854
|||| | || || || || ||||| || ||||| ||||||
Sbjct 2814924 CCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 2814964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303751511600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |