Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1499 138 1e-27 >seq1499 Length=34637 Score = 138 bits (152), Expect = 1e-27 Identities = 341/507 (67%), Gaps = 13/507 (3%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| ||||| | ||||||||| || || || || || |||||| | ||||| || || Sbjct 5691 TTTGATAATCACCAACGCGTTTCTCAAAGAAATTGGTCTTGCCCGCCAGAGAGATGGACT 5750 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAA-AATATTTTAGAGTACCCCAGTTCGGCGATT 16792 ||||||| ||||| ||||| || ||| |||| ||| || ||||| || || | Sbjct 5751 CCATGAAGTCAAACGGATTCGTCGCTTTGTAATACTTTTGATTACCCAAGGCGAGC-AGC 5809 Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAA-TTCGCAGTTCATTCCTATAAG 16851 | || || || || ||||| || ||||| ||| | || || |||||| || | || Sbjct 5810 AGTCGGTCGGCCACGAATTCGATGTATTGCTTCATGAGGTTTGC-GTTCATGCCCAATAG 5868 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA- 16910 || || | ||| |||||||||||| ||||| || || ||||| | || | Sbjct 5869 ACCACAGGGTAAAGCCTCCGTCAAAAATTCCTGCTCGATGCTGACAGCTTCGGTGATGAC 5928 Query 16911 -TACTAGCAACTCGTTCCTCGGAC--GGTGTATGTTTAAGATGTTTAAACATCAGACATG 16967 | || ||| || | ||||| || || || || ||| |||| ||||| | Sbjct 5929 GTCCT-GCA---CGGCCTGCGGACTGGGGCGGTGCTTTAGGTGTGAGAACAGGAGACAAG 5984 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 | || || || | |||||| || | ||| |||||||| ||||| |||| |||| Sbjct 5985 CAAAGTCAGTGTGCATTCCCTCATCCCGCGAGATGAGTTCGTTGGAAAAGGTCAGACCGG 6044 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 ||||| || || ||||| | ||| || | || || || || ||||| ||||| || | Sbjct 6045 GCATCAGACCACGCTTCTTCAGCCAGAAGACCGATGCAAATGAGCCAGAGAAGAAGATGC 6104 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147 ||||||| | ||||| |||| | ||||| ||| | || | || |||| |||| Sbjct 6105 CCTCGACTGCAGCAAAAGCGACAAGTCGTTGGGCAAAAGTTGAGTTCTTGTCGGCTATCC 6164 Query 17148 ATTTCTGCACCCACTCGG-CTTTTTGC 17173 || | | |||| |||| ||| |||| Sbjct 6165 ATCGCAGAGCCCAGTCGGCCTTCTTGC 6191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517534880336760