Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1499 104 2e-17 >seq1499 Length=34637 Score = 104 bits (114), Expect = 2e-17 Identities = 294/447 (66%), Gaps = 6/447 (1%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| ||||||| ||||||||| || ||||| || || || ||| | | ||| || | Sbjct 5691 TTTGATAATCACCAACGCGTTTCTCAAAGAAATTGGTCTTGCCCGCCAGAGAGATGGACT 5750 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAA-AATATCTTAGAGTACCCCAGTTCCGTAACT 16030 |||| || ||||| ||||| || ||| |||| || || ||||| || | | | Sbjct 5751 CCATGAAGTCAAACGGATTCGTCGCTTTGTAATACTTTTGATTACCCAAGGCGAGCAGC- 5809 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 | || || || || ||||| || ||||| ||| | || || || || | || Sbjct 5810 AGTCGGTCGGCCACGAATTCGATGTATTGCTTCATGAGGTTTGCGTTCATGCCCAATAGA 5869 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 | || | ||| | || ||||||| || || || || ||||| | |||| Sbjct 5870 CCACAGGGTAAAGCCTCCGTCAAAAATTCCTGCTCGATGCTGACAGCTTCGGTGATGACG 5929 Query 16151 TCGGTGGCTCGTGTTTCAGACGGTGTA--TGGTTTAGGTGTTTAAACATTAGACACGCGA 16208 || || || | | ||| | | || ||||||||| |||| ||||| || | Sbjct 5930 TCCT--GCACGGCCTGCGGACTGGGGCGGTGCTTTAGGTGTGAGAACAGGAGACAAGCAA 5987 Query 16209 AGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCA 16268 |||| || | ||| || || | ||| |||||||||||||| || | || |||| Sbjct 5988 AGTCAGTGTGCATTCCCTCATCCCGCGAGATGAGTTCGTTGGAAAAGGTCAGACCGGGCA 6047 Query 16269 TTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCT 16328 | || || ||||| | |||||| | || |||||||| || || ||||| || |||| Sbjct 6048 TCAGACCACGCTTCTTCAGCCAGAAGACCGATGCAAATGAGCCAGAGAAGAAGATGCCCT 6107 Query 16329 CAACAGATGCAAAAGCGATTAATCGTT 16355 | || | |||||||||| | ||||| Sbjct 6108 CGACTGCAGCAAAAGCGACAAGTCGTT 6134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511403807329240