Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq40 172 7e-38 seq1499 104 3e-17 >seq40 Length=17677 Score = 172 bits (190), Expect = 7e-38 Identities = 441/669 (66%), Gaps = 2/669 (0%) Strand=Plus/Plus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || |||||||| | |||||| || | | | ||||| ||||| |||||||| || ||| Sbjct 2323 GGGCACATCAAAGTCCACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATC 2382 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 ||||| || | |||||||||| | | ||| || || || |||||| | | Sbjct 2383 CAAAGGGCAAAGAATAGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAA 2442 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 || ||||| | | | || | |||||| || || | ||| |||| | | |||| || Sbjct 2443 TCCAGGAATTCAAAGACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGA 2502 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| ||||| ||||| | || | |||||||| || | || | | ||| ||| Sbjct 2503 CGCTTGTTGCCTCCTTGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGA 2562 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 | ||| |||||||| | |||||||| || |||||| || | || ||||| Sbjct 2563 ACAATGCCATTGGAGGAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGG 2622 Query 54296 CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-T 54354 || || || || || || || | || ||||| | || || |||||| | | | Sbjct 2623 TGGATGTTCAGGCCAATGCCACCGGCAGTCTTCGAGATGAGAGCACA-CGTTTTGAGGGT 2681 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 54414 || |||||||| || |||||||| ||| |||||| | | || || ||||| || Sbjct 2682 GTCGTAGATGCCGTCGATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTG 2741 Query 54415 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 54474 | | || || ||||| || |||||||| || ||||| || || |||| | ||| Sbjct 2742 AGGCTGTGGGGTGCCAGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGA 2801 Query 54475 AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 54534 | |||| ||| |||||||| | ||| || | | || || || || ||||| Sbjct 2802 CATGAGATGGTAGGTCTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGCGAC 2861 Query 54535 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGA 54594 |||||| | ||||||||| || | || | | ||| || | || | ||| || Sbjct 2862 ACGCATAATCATGTGCTGTGGACGCTCGGCCACTTTGCCATTGGTGCGGAGGAGGTATGA 2921 Query 54595 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 54654 | || | ||| || || ||||| || | ||| |||||||| ||||| | || | Sbjct 2922 TCGCTCGAGAGTCTTGAACCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGC 2981 Query 54655 TGAGTTGAG 54663 |||||||| Sbjct 2982 CGAGTTGAG 2990 >seq1499 Length=34637 Score = 104 bits (114), Expect = 3e-17 Identities = 124/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235 |||||||||||| || || |||||||| || |||||||| || ||||| || | || || Sbjct 6022 TTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTTCTTCAGCCAGAAGACCGATGC 6081 Query 24236 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA 24295 |||||| ||||| ||||| || || || ||||| ||||| || | ||||| || || | Sbjct 6082 AAATGAGCCAGAGAAGAAGATGCCCTCGACTGCAGCAAAAGCGACAAGTCGTTGGGCAAA 6141 Query 24296 ACCGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 | | | |||| |||||| ||||||| ||||||||||| Sbjct 6142 AGTTGAGTTCTTGTCGGCTATCCATCGCAGAGCCCAGTCGGCCTTCTT 6189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593709302541360