Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18]
1,657 sequences; 26,990,446 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq1307 93.3 4e-14
>seq1307
Length=69414
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007
||| || ||||| | ||||||| || | ||| |||||| || ||||| |||||||
Sbjct 39106 TCCTCCACGCAGACGCAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGA 39047
Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067
||| || | | ||||||||||||||||| ||| | || || | ||| |||||| ||
Sbjct 39046 CAGTGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGG 38987
Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127
| || |||||||| |||||| || || | | | | || || | ||
Sbjct 38986 GATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCTATCGTGTCTGACGATTCGAC 38927
Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
||||| || |||||||| ||||| | || || ||||| || ||||||
Sbjct 38926 TTCCAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 38878
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | |||||||||||| ||||| || ||||| |
Sbjct 38369 CCTCCACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCTC 38310
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| ||| | ||||||| ||||| || || ||| | || || | ||| || ||| |||
Sbjct 38309 AAGGTGCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGA 38250
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| |||||| || || | ||| || || || ||||
Sbjct 38249 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGGACTCCACC 38190
Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151
|| | ||| ||||||||||| ||
Sbjct 38189 TCAAGGGTGATGGTCTTGCCAGT 38167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422250672607412
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |