Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1499 172 6e-38 seq1188 132 5e-26 seq1307 120 3e-22 seq59 111 2e-19 >seq1499 Length=34637 Score = 172 bits (190), Expect = 6e-38 Identities = 209/285 (73%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | || ||| | ||||| Sbjct 6592 ATATGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAAGAGATTGACCTC 6533 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | | | |||||| | ||||| | |||||| | Sbjct 6532 TCCAAGGACCTTCACGACTGGAACAACAGACTCAACGACGATGAGCGTTACTTCATCTCG 6473 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| |||| || |||||||| || ||||| ||||||||||| || || ||||| Sbjct 6472 CACGTCTTGGCATTCTTCGCCGCATCTGATGGCATTGTCAACGAGAACCTCGTTGAGCGC 6413 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | |||||||| | ||||||| || |||||||||||||| || ||| ||| Sbjct 6412 TTCAGTGGTGAGGTGCAAATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAAATCATGATG 6353 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | || || |||| || ||| || |||||||| ||| Sbjct 6352 GAGAACATTCATTCRGAAACATACTCGCTTCTGATCGACACCTAC 6308 Score = 156 bits (172), Expect = 4e-33 Identities = 271/389 (70%), Gaps = 4/389 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| ||||| ||||| |||| || | | | || | | | || | Sbjct 6188 AGAAGGCCGACTGGGCTCTGCGATGGATAGCCGACAAGAACTCAACTTTTGCCCAACGAC 6129 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || || || || ||||||||| ||||||| || ||| || || | | || | Sbjct 6128 TTGTCGCTTTTGCTGCAGTCGAGGGCATCTTCTTCTCTGGCTCATTTGCATCGGTCTTCT 6069 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || || || |||||||| ||||| || |||||| |||||||| ||| Sbjct 6068 GGCTGAAGAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAACTCATCTCGCGGG 6009 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 | ||||| |||| |||||||| ||| | |||||| || | ||| || || | Sbjct 6008 ATGAGGGAATGCACACTGACTTTGCTTGTCTCCTGTTCTCACACCTAAAGCACCGCCCCA 5949 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 | || | ||| ||| || ||||||| || ||| |||||||||| || | | Sbjct 5948 GTCCGCAGGCCGTGCAGGACGTCATCACCGAAGCTGTCAGCATCGAGCAGGAATTTTTGA 5889 Query 117282 CCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAACG-ATGTCGCAATACAT 117339 | || || | || ||| |||| |||| | || || || | ||| ||||||||| Sbjct 5888 CGGAGGCTTTACCCTGTG-GTCTATTGGGCATGAAC-GCAAACCTCATGAAGCAATACAT 5831 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCG 117368 ||| ||||| |||||| | |||||||||| Sbjct 5830 CGAATTCGTGGCCGACCGACTGCTGCTCG 5802 >seq1188 Length=31586 Score = 132 bits (146), Expect = 5e-26 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| ||||| || |||||||| |||||||| |||| |||||| || |||||| | | Sbjct 1537 TTCGTCAAAACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAATCCTCCGACACCATC 1478 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | |||||| || || | ||||| ||||| ||||| |||||||||| || | Sbjct 1477 GACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGCTTG 1418 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||||||||| ||||| || |||| | | ||| | | ||| || |||||||||||| Sbjct 1417 ATCTTCGCGGGCAAGCAGCTCGAGGACGGGAGGACCTTGAGCGATTATAACATCCAGAAG 1358 Query 40879 G 40879 | Sbjct 1357 G 1357 >seq1307 Length=69414 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| |||||||| |||| || ||| | | Sbjct 38651 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACCATCACTCTCGAAGTAGAATCTTCA 38710 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || || | || ||||| ||||||||| ||||||| Sbjct 38711 GACACAATCGACAATGTCAAGGCCAAGATACAAGATAAAGAAGGCATCCCCCCGGACCAA 38770 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| |||||||| | || || | ||||| ||| |||||||||| Sbjct 38771 CAGCGCTTGATCTTCGCCGGCAAACAATTAGAAGATGGCCGCACACTCTCCGACTACAAC 38830 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| || |||| || ||||| || Sbjct 38831 ATCCAGAAAGAATCCACCCTACATCTCGT 38859 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || || || |||||||| | || |||||| | | Sbjct 38878 AATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACACTGGAAGTCGAATCGTC 38937 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||||| || || | ||||| ||||| ||||| ||||||| Sbjct 38938 AGACACGATAGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCACCGGACCA 38997 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| || |||||||||||||| || | ||| || || |||||||| Sbjct 38998 ACAGCGCCTGATCTTTGCAGGCAAACAGCTGGAGGATGGGCGGACACTGTCGGACTACAA 39057 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| ||| || || | ||| |||| Sbjct 39058 CATCCAGAAGGAGAGCACCCTTCACTTGGTGCTGCG 39093 Score = 113 bits (124), Expect = 5e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 || |||| || || || || ||||| ||||| ||| | || || || | | |||| | Sbjct 38430 TAGTCGTCAAGACCCTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTCGGACACCA 38489 Query 40757 TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGAC 40816 | | | | |||| || |||| ||||||||||| ||||| | || || || || | Sbjct 38490 TCGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAACAGCGTC 38549 Query 40817 TCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGA 40876 |||||| ||| ||||| ||||| || |||| || || ||| ||||||||||||||| | Sbjct 38550 TCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAA 38609 Query 40877 AGGAGGCCACGCTGCATCTAGT 40898 |||| |||| || ||||| || Sbjct 38610 AGGAATCCACTCTTCATCTCGT 38631 >seq59 Length=11125 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || || ||||| | ||||||||||| || |||| ||||||||| ||||| || Sbjct 4238 GACAAGGAAGGAATCCCACCTGACCAGCAACGCCTGATCTTCGCGGGCAAGCAGCTCGAG 4297 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| ||| |||||||| ||||| |||||| ||||||| || || || || Sbjct 4298 GACGGTCGCACTCTCTCAGACTACAATATCCAAAAGGAGTCCACGCTCCACCTGGTCTTA 4357 Query 40903 CGCTTGAGGGGCGG 40916 |||||| | || || Sbjct 4358 CGCTTGCGCGGAGG 4371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208528522320