Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1609 107 2e-18 seq1307 104 2e-17 seq40 98.7 9e-16 seq1188 93.3 4e-14 seq59 89.7 4e-13 >seq1609 Length=13884 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 ||||| ||||| |||||||||| || | | ||||||||||| || || ||| |||| Sbjct 498 TTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 439 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || || ||||||||||| || || || || | ||| Sbjct 438 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 379 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||| | | ||||||||||| ||| | || ||||| ||||| ||||| || || Sbjct 378 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 320 >seq1307 Length=69414 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || ||||| ||||| ||||||| ||||| ||||| Sbjct 38351 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCTCAAGGTGCGACCGTCCTCA 38292 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| |||||||| ||||||||||||| ||||| || || || || |||||||| Sbjct 38291 AGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGAATTCCTTCCTTGTCCTGG 38232 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | | ||| ||||| | ||| | || ||| Sbjct 38231 ATCTTGGCCTTGACGTTATCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTG 38172 Query 118710 CCGGT 118714 || || Sbjct 38171 CCAGT 38167 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || ||||| |||||||| ||| | ||| || || |||||||| || || Sbjct 38619 GTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGCTGCTTGCCG 38560 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||||||||| ||||||||||| || ||||| ||||| ||| || || Sbjct 38559 GCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCCTGAATCTTGGCCTTT 38500 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||||| ||| ||||| | ||| | || ||||| ||||| || Sbjct 38499 ACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTC 38440 Query 118722 TTTAC 118726 || || Sbjct 38439 TTGAC 38435 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || ||||||||| | || ||| || || |||||||| || | Sbjct 39105 CCTCCACGCAGACGCAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 39046 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || ||| |||||| |||||||| || || |||| || ||||| || || || || Sbjct 39045 AGTGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGGG 38986 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | || | ||||| | ||||| Sbjct 38985 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCTATCGTGTCTGACGATTCGACT 38926 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || |||||||| || || ||||| |||||||| Sbjct 38925 TCCAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 38879 >seq40 Length=17677 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 133224 TTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGT 133283 ||||| || ||||| ||||| || || || || | | ||||| |||||| ||| | ||| Sbjct 1412 TTGACGACCTGAAATTCGCCCGCTAGCACACGACGGGAATATATATTCGAGGTGTAAGGT 1471 Query 133284 TCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACC 133343 ||||| |||| ||||||||||| ||||| | |||| |||||||||||| ||||| Sbjct 1472 TCGAAGCATTCATTGTTGCCGAGGATCTGGGATGTCGAGGCCGTGGGCATGGGGGCCACG 1531 Query 133344 AACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCAC 133403 | | || || | || |||| |||| |||||| || | | | ||||||||| Sbjct 1532 AGGAGGGAATTGCGAACACCGTGCTTGGCGATGTTGGACCGGAGCGTATCCCAGTCCCAG 1591 Query 133404 AG 133405 || Sbjct 1592 AG 1593 >seq1188 Length=31586 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || ||||| |||||||||| || | | ||||||||||| || || ||| |||| Sbjct 1359 TTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 1418 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || || ||||||||||| || || || || | ||| Sbjct 1419 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 1478 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||| | | |||||||||| || | || ||||| ||||| ||||| || || Sbjct 1479 ATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 1537 >seq59 Length=11125 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| || | || |||| ||||| || ||||| ||||| || ||||| || Sbjct 4371 CCTCCGCGCAAGCGTAAGACCAGGTGGAGCGTGGACTCCTTTTGGATATTGTAGTCTGAG 4312 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| ||||||||||| || || ||| |||| || || ||||| || || || Sbjct 4311 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCAGGTGGG 4252 Query 118632 ATGCCCTCCTTGTCTGTAATTT 118653 || || ||||||||| | |||| Sbjct 4251 ATTCCTTCCTTGTCTTTGATTT 4230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821638930644