Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1307 129 7e-25 seq1609 91.5 2e-13 seq1188 91.5 2e-13 >seq1307 Length=69414 Score = 129 bits (142), Expect = 7e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 || |||||||| | | ||||| |||||| || | ||||||||||| || || ||||| Sbjct 39111 TACTGTCCTCCACGCAGACGCAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAG 39052 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | ||| |||||| | || || ||||| || || || || || || ||||| ||||| Sbjct 39051 TCCGACAGTGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCC 38992 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT 43130 | || | | |||||||||| ||| || |||| | | | |||||| |||| Sbjct 38991 GGTGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCTATCGTGTCTGACGAT 38932 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || || | |||||||| || || || || ||||| |||||||| |||||| Sbjct 38931 TCGACTTCCAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 38878 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | ||||| || | ||| |||||| ||||||||||| || | Sbjct 38369 CCTCCACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCTC 38310 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || |||| || |||||||| ||||| || ||||| ||||| || || | || Sbjct 38309 AAGGTGCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGA 38250 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||||||| ||| || |||| | | | ||||||| || ||||| Sbjct 38249 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGGACTCCACC 38190 Query 43137 TCGACCGTGATGGTTTTGCCCGT 43159 || | |||||||| ||||| || Sbjct 38189 TCAAGGGTGATGGTCTTGCCAGT 38167 >seq1609 Length=13884 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 42988 TGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAG 43047 |||| ||||||| || || ||||| || |||| | |||| || |||||||| || | Sbjct 506 TGCTAACCTTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCG 447 Query 43048 CGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGA 43107 |||| || | ||||||||||| | ||| | | |||||||||| ||| || |||| Sbjct 446 CGAAGATCAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGA 387 Query 43108 GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| || || || |||| |||||||| |||||||| || || | Sbjct 386 CATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTT 327 Query 43168 TTACAAAG 43175 | || ||| Sbjct 326 TGACGAAG 319 >seq1188 Length=31586 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 42988 TGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAG 43047 |||| |||| || || || ||||| || |||| | |||| || |||||||| || | Sbjct 1351 TGCTAACCTTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCG 1410 Query 43048 CGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGA 43107 |||| || | ||||||||||| | ||| | | |||||||||| ||| || |||| Sbjct 1411 CGAAGATCAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGA 1470 Query 43108 GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| ||||| || |||| |||||||| |||||||| || || | Sbjct 1471 CATTGTCGATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTT 1530 Query 43168 TTACAAAG 43175 | || ||| Sbjct 1531 TGACGAAG 1538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571805756227960