Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18]
1,657 sequences; 26,990,446 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1307 116 3e-21
>seq1307
Length=69414
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || |||||||||||||| ||||||||||| |||| || | || |||
Sbjct 39087 ACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGTGTCCGCCCATCCTCC 39028
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || || || |||| ||||||||||| || || | |||||||||||||
Sbjct 39027 AGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGG 38968
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | |||| || || |||| || || |||||
Sbjct 38967 ATCTTCGCCTTGACATTGTCTATCGTGTCTGACGATTCGACTTCCAGTGTGATGGTCTTT 38908
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| |||||||||||||| |||||
Sbjct 38907 CCGGTCAGGGTCTTCACAAAGATCTGCAT 38879
Score = 107 bits (118), Expect = 2e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
||||| || |||||||||||| || || |||| || || || || ||||||||
Sbjct 38613 TCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAG 38554
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
|| | |||||||| |||||||| | |||||| |||||| ||| || ||| ||
Sbjct 38553 ATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACATTG 38494
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | ||||| | ||||||||||| |||||| |||||||| ||||| ||||| ||
Sbjct 38493 TCGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 38435
Score = 86.0 bits (94), Expect = 5e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| |||||||||||| ||||||||| ||| |||| |||| ||
Sbjct 38351 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCTCAAGGTGCGACCGTCCTCA 38292
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| || ||||| || || || | |||||||| || || || | || |||||||||
Sbjct 38291 AGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGAATTCCTTCCTTGTCC 38235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395067221579797
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |