Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1307 116 3e-21 >seq1307 Length=69414 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || |||||||||||||| ||||||||||| |||| || | || ||| Sbjct 39087 ACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGTGTCCGCCCATCCTCC 39028 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || |||| ||||||||||| || || | ||||||||||||| Sbjct 39027 AGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGG 38968 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| || || |||| || || ||||| Sbjct 38967 ATCTTCGCCTTGACATTGTCTATCGTGTCTGACGATTCGACTTCCAGTGTGATGGTCTTT 38908 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| ||||| Sbjct 38907 CCGGTCAGGGTCTTCACAAAGATCTGCAT 38879 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||| || |||||||||||| || || |||| || || || || |||||||| Sbjct 38613 TCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAG 38554 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | |||||||| |||||||| | |||||| |||||| ||| || ||| || Sbjct 38553 ATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACATTG 38494 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| | ||||||||||| |||||| |||||||| ||||| ||||| || Sbjct 38493 TCGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 38435 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||||||| ||||||||| ||| |||| |||| || Sbjct 38351 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCTCAAGGTGCGACCGTCCTCA 38292 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || ||||| || || || | |||||||| || || || | || ||||||||| Sbjct 38291 AGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGAATTCCTTCCTTGTCC 38235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395067221579797