Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq40 271 7e-68 seq1499 123 2e-23 seq1609 107 2e-18 seq1188 102 7e-17 seq1307 89.7 5e-13 >seq40 Length=17677 Score = 271 bits (300), Expect = 7e-68 Identities = 444/637 (70%), Gaps = 2/637 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| || || |||| || |||||||| ||||| || || |||| || || || ||||| Sbjct 2352 TTCGACTCGCTTCATGAAGAGATCCGGGATCCAAAGGGCAAAGAATAGATCTCGAGCGCG 2411 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || || |||||| ||||| |||||||| || || || ||||| |||||||| Sbjct 2412 GACTTCTTCCTTGCCGTGATTCTTCCGCAAATCCAGGAATTCAAAGACGTCGGCATGCCA 2471 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 ||||||||||| | ||| || || || || | ||| ||||| || |||||||| || || Sbjct 2472 TGGCTCGAGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCCTCCTTGATCGACATAGCG 2531 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 ||| ||||||||| | || | |||||| || || | || ||||| | ||| ||| Sbjct 2532 GGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAGGAGCCATTGGTGCC 2591 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 | | | | ||| ||| | || |||| | ||| | || | || ||||| ||| | | Sbjct 2592 CCCGATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGCCAATGCCACCGGCAGT 2651 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 ||||| || | || || ||| || |||||||||||||| ||||| || ||||| || Sbjct 2652 CTTCGAGATGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGTCGATACTATCCTCCTT 2711 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTG-CGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759 | ||| |||||| || || ||||| || ||| |||| || | || ||||| | Sbjct 2712 CATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGG-GTGCCAGCATTGAACAAGG 2770 Query 23760 TCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCAT 23819 | ||| ||||| || |||||| | ||||| |||| ||| || |||||| | | Sbjct 2771 TAGGGGACGCGTGGGTGAAGTATTTCTGAGACATGAGATGGTAGGTCTCGATGACCTTGT 2830 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGA 23879 | |||| || |||||||||| | ||||| ||||| ||||||| || || | |||| Sbjct 2831 CGATGTTGTCGTCGTGTATACCCACAGCGACACGCATAATCATGTGCTGTGGACGCTCGG 2890 Query 23880 CCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGT 23939 || ||| || | || || ||||| || | | || || || ||||| || | Sbjct 2891 CCACTTTGCCATTGGTGCGGAGGAGGTATGATCGCTCGAGAGTCTTGAACCCAAAGTATT 2950 Query 23940 CATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 ||||| ||||| || |||| || |||||||| || Sbjct 2951 GGTAGTTGAAGTCTCGGTCGTAGACGATGGCCGAGTT 2987 >seq1499 Length=34637 Score = 123 bits (136), Expect = 2e-23 Identities = 313/469 (67%), Gaps = 19/469 (4%) Strand=Plus/Minus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 |||| || || || ||||| || || ||||| || ||| ||||| | | || ||| Sbjct 6125 TCGCTTTTGCTGCAGTCGAGGGCATCTTCTTCTCTGGCTCATTTGCATCGGTCTTCTGGC 6066 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 ||||||| || || ||||||||||| ||||| ||| |||||| | || ||||| || | Sbjct 6065 TGAAGAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAACTCATCTCGCGGGATG 6006 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 |||| | || ||||| ||||| || || ||| ||| ||| | || |||| | | Sbjct 6005 AGGGAATGCACACTGACTTTGCTTGTCTCCTGTTCTCACACCT----AAAGCACCG-CCC 5951 Query 58159 GGGATCGCA-----TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGT 58213 | |||| | |||| | |||||||| || ||| ||||| | || ||| | Sbjct 5950 CAGTCCGCAGGCCGTGCAGGACGTCATCACCGAAGCTGTCAGCATCGAGCAGGAATTTTT 5891 Query 58214 CACCGAAGCCCTA-CCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 || || || || || |||| | | | || |||||| | | ||| | |||| Sbjct 5890 GACGGAGGCTTTACCCTGTGGTC-TATTGGGCATGAACGCAAACCTCATGAAGCAATACA 5832 Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTG---ATTGGAGAGCGTCATTACAACA 58329 | || || || |||||| |||| |||||| || | | | || ||||||| Sbjct 5831 TCGAATTCGTGGCCGACCGACTGCTGCTCGCCTTGGGTAATCAAAAG---TATTACAAAG 5775 Query 58330 CGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCG 58389 ||| ||||||||||| || ||| | ||||| || | ||||||||| || || || | Sbjct 5774 CGACGAATCCGTTTGACTTCATGGAGTCCATCTCTCTGGCGGGCAAGACCAATTTCTTTG 5715 Query 58390 aaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAA 58438 | ||| ||| | || ||||||||| || || ||| ||| ||||| Sbjct 5714 AGAAACGCGTTGGTGATTATCAAAAAGCAGGTGTAATG-GCGTCAACAA 5667 Score = 114 bits (126), Expect = 1e-20 Identities = 201/293 (69%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||| | ||||| | ||||| Sbjct 6592 ATATGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAAGAGATTGACCTC 6533 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||| ||| | | ||||| || |||| | | || || Sbjct 6532 TCCAAGGACCTTCACGACTGGAACAACAGACTCAACGACGATGAGCGTTACTTCATCTCG 6473 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| ||||| || ||||||||||| ||||| ||||| |||||||| | || || | Sbjct 6472 CACGTCTTGGCATTCTTCGCCGCATCTGATGGCATTGTCAACGAGAACCTCGTTGAGCGC 6413 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || |||||| | | ||||| | ||||| ||||| || ||| | || Sbjct 6412 TTCAGTGGTGAGGTGCAAATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAAATCATGATG 6353 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || ||| | ||||| |||| || ||||| || ||||| || ||| | ||||| Sbjct 6352 GAGAACATTCATTCRGAAACATACTCGCTTCTGATCGACACCTACATCAAGGA 6300 >seq1609 Length=13884 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| || || ||||| ||||| || |||||| |||| || || | ||||||| || Sbjct 320 TTCGTCAAAACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATC 379 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || ||||||||| || | ||||| ||||||||||| | Sbjct 380 GACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGCTTG 439 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||| ||||| ||| | || ||| | ||| |||||||||||||||| ||||| Sbjct 440 ATCTTCGCGGGCAAGCAGCTCGAGGACGGGAGGACCTTGAGCGATTATAACATCCAAAA 498 >seq1188 Length=31586 Score = 102 bits (112), Expect = 7e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| || || ||||| ||||| || ||||| |||| || ||| | ||||||| || Sbjct 1537 TTCGTCAAAACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAATCCTCCGACACCATC 1478 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || ||||||||| || | ||||| ||||||||||| | Sbjct 1477 GACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGCTTG 1418 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||| ||||| ||| | || ||| | ||| |||||||||||||||| || || Sbjct 1417 ATCTTCGCGGGCAAGCAGCTCGAGGACGGGAGGACCTTGAGCGATTATAACATCCAGAA 1359 >seq1307 Length=69414 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| ||||| ||||| || || ||| | || || || | || |||| ||| Sbjct 38433 TCGTCAAGACCCTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTCGGACACCATCG 38492 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | || || | || |||||| || || | || ||||| || |||||||| | Sbjct 38493 ACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAACAGCGTCTCA 38552 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | ||||| ||||| ||| | |||||| ||| | ||| || ||||| ||||| | Sbjct 38553 TCTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAAAGG 38612 Query 31383 AATCGACTCTTCATCTGGTACT 31404 |||| ||||||||||| || || Sbjct 38613 AATCCACTCTTCATCTCGTCCT 38634 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || |||||| | || || || | ||||||| |||| | ||||| Sbjct 38167 ACTGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACGATCGATAACGTCAAGGCC 38226 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | || |||||||||||| | || || || || |||||||| || || ||||| || Sbjct 38227 AAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAACAGCGTCTCATCTTTGCTGGAAAG 38286 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 ||| | || ||| | || ||||||| || || ||||| || || || |||||||| Sbjct 38287 CAGCTTGAGGACGGTCGCACCTTGAGCGACTACAATATTCAGAAGGAGTCCACTCTTCAC 38346 Query 31397 CTGGTACT 31404 |||| || Sbjct 38347 TTGGTCCT 38354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757167063440