Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq40 93.3 8e-14 seq1499 84.2 4e-11 >seq40 Length=17677 Score = 93.3 bits (102), Expect = 8e-14 Identities = 175/251 (70%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || || |||||||| ||||||| || | || || || || || || || || || Sbjct 2641 CCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGTCGATA 2700 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGTTCCACA 94910 ||||| || | | | | | | |||||| ||||| | || || |||| || ||| Sbjct 2701 CTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGG-GTGCCAGC 2759 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 ||| |||| || ||||| || ||||| || || | | |||||||||| || || || Sbjct 2760 ATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGACATGAGATGGTAGGTCTC 2819 Query 94971 AATGACAGATTTGATGTCTGATC--CGTGAATGCCGACAGCCACACGCATAATCATGTCC 95028 ||||| | ||||| || || |||| || || ||||| |||||||||||||||| | Sbjct 2820 GATGACCTTGTCGATGT-TG-TCGTCGTGTATACCCACAGCGACACGCATAATCATGTGC 2877 Query 95029 TGAGGGCGCTC 95039 || || ||||| Sbjct 2878 TGTGGACGCTC 2888 >seq1499 Length=34637 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATT 101961 ||| || ||| | |||| || ||||||||||| || || |||||||| ||| |||| Sbjct 6142 TTTTGCCCAACGACTTGTCGCTTTTGCTGCAGTCGAGGGCATCTTCTTCTCTGGCTCATT 6083 Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 ||||| | |||||| | ||||| | ||| | |||| ||||| |||| ||||| || Sbjct 6082 TGCATCGGTCTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGA 6023 Query 102022 GTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 |||| || |||| || || | || |||||||| || | ||||| Sbjct 6022 ACTCATCTCGCGGGATGAGGGAATGCACACTGACTTTGCTTGTCTCCTGTT 5972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989562990822435