Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq40 168 8e-37 seq1499 111 2e-19 >seq40 Length=17677 Score = 168 bits (186), Expect = 8e-37 Identities = 575/889 (65%), Gaps = 8/889 (1%) Strand=Plus/Plus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || |||||||| | |||||| || | | | ||||| ||||| |||||||| || ||| Sbjct 2323 GGGCACATCAAAGTCCACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATC 2382 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 ||||| || | |||||||||| | | ||| || || || |||||| | | Sbjct 2383 CAAAGGGCAAAGAATAGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAA 2442 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 || ||||| | | | || | |||||| || || | ||| ||||| | | |||| || Sbjct 2443 TCCAGGAATTCAAAGACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGA 2502 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| ||||| ||||| | || | |||||||| || | || | | ||| ||| Sbjct 2503 CGCTTGTTGCCTCCTTGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGA 2562 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | ||| || || || |||||||| || |||||| || | || ||||| Sbjct 2563 ACAATGCCATTGGAGGAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGG 2622 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-T 63592 || || || || || || || | || ||||| | || || |||||| | | | Sbjct 2623 TGGATGTTCAGGCCAATGCCACCGGCAGTCTTCGAGATGAGAGCACA-CGTTTTGAGGGT 2681 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652 ||| |||||||| || || ||||| || |||||| | | || || ||||| || Sbjct 2682 GTCGTAGATGCCGTCGATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTG 2741 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 | | | || || ||||| || |||||||| || ||||| || || |||| | ||| Sbjct 2742 AGGCTGTGGGGTGCCAGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGA 2801 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63772 | |||| ||| ||||| || | ||| || | | || || || || ||||| Sbjct 2802 CATGAGATGGTAGGTCTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGCGAC 2861 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||| | ||||||||| || | || | | |||| || | | | ||| || Sbjct 2862 ACGCATAATCATGTGCTGTGGACGCTCGGCCACTTTGCCATTGGTGCGGAGGAGGTATGA 2921 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892 | || | ||| || || ||||| || | ||| |||||||| ||||| | || | Sbjct 2922 TCGCTCGAGAGTCTTGAACCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGC 2981 Query 63893 CGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTTGAAATA--ATC 63950 ||| ||||||| || | || | || | || ||| | |||| ||| || Sbjct 2982 CGAGTTGAGCTCTTCGGCGTGCTTCATGACGGTCTCGTAGGTCTT--TTGAGATATCATG 3039 Query 63951 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 64010 || | | || || ||||| || | |||| | ||| ||| || || || | Sbjct 3040 GGGGCTAGCTTGTTGTTCTTAGGGTTGATGTAGTGGTATAGATCGTCGATGACAGAGGAA 3099 Query 64011 AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCA 64070 ||| |||| || || | |||||| || || || | || || | || || || |||||| Sbjct 3100 AATTGTTTCTTGGTCTGCTTGTGGAGGTTGGAAACAGCAATGCGTGCTGCAAGGATGGCA 3159 Query 64071 TAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGA 64118 || || ||||| ||| | || || |||||| ||||||| ||| || Sbjct 3160 TAGTCGGGATG-GGTGACGGTCATGTACGCTGCTGTTTCGGCGGCCTGA 3207 >seq1499 Length=34637 Score = 111 bits (122), Expect = 2e-19 Identities = 308/470 (66%), Gaps = 2/470 (0%) Strand=Plus/Plus Query 33264 TTGTCTTCTTGA-GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 33322 |||| || |||| | ||| || || |||||| || ||||| || ||||| || || || Sbjct 5663 TTGT-TTGTTGACGCCATTACACCTGCTTTTTGATAATCACCAACGCGTTTCTCAAAGAA 5721 Query 33323 ATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA 33382 ||| || || || ||| || || |||||||| ||||||||||| || | ||||| Sbjct 5722 ATTGGTCTTGCCCGCCAGAGAGATGGACTCCATGAAGTCAAACGGATTCGTCGCTTTGTA 5781 Query 33383 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTT 33442 | |||| | ||||| | | || || || || |||||||| || ||| || Sbjct 5782 ATACTTTTGATTACCCAAGGCGAGCAGCAGTCGGTCGGCCACGAATTCGATGTATTGCTT 5841 Query 33443 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 33502 ||| | | ||||| || | || | || | |||| | || | |||||| || Sbjct 5842 CATGAGGTTTGCGTTCATGCCCAATAGACCACAGGGTAAAGCCTCCGTCAAAAATTCCTG 5901 Query 33503 TTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAA 33562 || ||| || || | || || | |||| | ||| || | || Sbjct 5902 CTCGATGCTGACAGCTTCGGTGATGACGTCCTGCACGGCCTGCGGACTGGGGCGGTGCTT 5961 Query 33563 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAA 33622 || ||| |||| | ||| || || || ||||| ||||| || | || | Sbjct 5962 TAGGTGTGAGAACAGGAGACAAGCAAAGTCAGTGTGCATTCCCTCATCCCGCGAGATGAG 6021 Query 33623 TTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGC 33682 |||||| ||||| || || |||||||| || |||||||| || ||||| || | || || Sbjct 6022 TTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTTCTTCAGCCAGAAGACCGATGC 6081 Query 33683 GAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC 33732 ||||| || || |||||||| || || ||||||||||| || | ||||| Sbjct 6082 AAATGAGCCAGAGAAGAAGATGCCCTCGACTGCAGCAAAAGCGACAAGTC 6131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629804554902960