Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq40 168 9e-37 seq1499 100 4e-16 >seq40 Length=17677 Score = 168 bits (186), Expect = 9e-37 Identities = 602/934 (64%), Gaps = 8/934 (1%) Strand=Plus/Plus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 ||||||||||| || ||| || | | || ||| || | || |||||||| | | Sbjct 2278 TCGAACTCGTCCCCATAAATATCTGCAAGACCCGGAGCCTCGTTAGGGCACATCAAAGTC 2337 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 ||||| || | | | ||||| ||||| |||||||| || |||||||| || | ||| Sbjct 2338 CACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATCCAAAGGGCAAAGAAT 2397 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 | ||||| | | ||| || || || |||||| | ||| ||||| | | Sbjct 2398 AGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAATCCAGGAATTCAAAG 2457 Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221 | || |||||| || || | ||| ||||| | | |||| || || ||||| ||||| Sbjct 2458 ACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCCTCCT 2517 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 ||||| | || | |||||||| || | || | | ||| |||| ||| |||||||| Sbjct 2518 TGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAG 2577 Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCT 66341 | |||||||| || |||||| || | || ||||| || || || Sbjct 2578 GAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGCCA 2637 Query 66342 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCATAGATGCCCTC 66400 || || || || | || ||||| | || || |||||| | || || |||||||| || Sbjct 2638 ATGCCACCGGCAGTCTTCGAGATGAGAGCACA-CGTTTTGAGGGTGTCGTAGATGCCGTC 2696 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 |||||||| ||| |||||| | | || || ||||| || | | || || Sbjct 2697 GATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCC 2756 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 ||||| || |||||||| || ||||| || || |||| | ||| | |||| ||| || Sbjct 2757 AGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGACATGAGATGGTAGGT 2816 Query 66521 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580 ||| || | ||| || | | || || || || ||||||||||| | |||||| Sbjct 2817 CTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGCGACACGCATAATCATGTG 2876 Query 66581 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 66640 ||| || | || | | ||| || | | | ||| ||| || | ||| || Sbjct 2877 CTGTGGACGCTCGGCCACTTTGCCATTGGTGCGGAGGAGGTATGATCGCTCGAGAGTCTT 2936 Query 66641 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 66700 || ||||| || | ||| |||||||| ||||| | || |||||||||| | || Sbjct 2937 GAACCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGCCGAGTTGAGCTCTTC 2996 Query 66701 CTTATATTTGTTAACTACATCCATGGTAATACTTGAAATA--ATCGGAGAATGTTTCCCA 66758 | || | || || ||| | |||| ||| || || | | || Sbjct 2997 GGCGTGCTTCATGACGGTCTCGTAGGTCTT--TTGAGATATCATGGGGGCTAGCTTGTTG 3054 Query 66759 TTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 66818 || ||||| |||| |||| | ||| ||| || || || |||| |||| || || Sbjct 3055 TTCTTAGGGTTGATGTAGTGGTATAGATCGTCGATGACAGAGGAAAATTGTTTCTTGGTC 3114 Query 66819 TCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGT 66878 | ||||| || || || || || || | || || | |||||||| || ||||| || Sbjct 3115 TGCTTGTGGAGGTTGGAAACAGCAATGCGTGCTGCAAGGATGGCATAGTCGGGATG-GGT 3173 Query 66879 GTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGA 66911 | | || || |||||| ||||||| ||| || Sbjct 3174 GACGGTCATGTACGCTGCTGTTTCGGCGGCCTGA 3207 >seq1499 Length=34637 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 36199 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 36258 |||||||||||| || || |||||||| || |||||||| || ||||| || | || || Sbjct 6022 TTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTTCTTCAGCCAGAAGACCGATGC 6081 Query 36259 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTC 36308 |||||| ||||| ||||| || || || ||||| ||||| || | ||||| Sbjct 6082 AAATGAGCCAGAGAAGAAGATGCCCTCGACTGCAGCAAAAGCGACAAGTC 6131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658159167595880