Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq379 93.3 3e-14 seq1499 86.0 4e-12 >seq379 Length=117818 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 33575 AGATGGGCGACAAGTTTGCAT-CGTTCACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633 |||| |||||||||||||| | | ||||| ||||| || ||| |||||| | ||| Sbjct 85454 AGATTGGCGACAAGTTTGCTTCCAGGCACGG-TCAGAAAGGGACGATCGGCATCACTTAC 85512 Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693 |||| ||||||||| ||||| || |||||||| || ||||| |||||||||| Sbjct 85513 CGCCAGGAGGACATGCCTTTCACTAGTGAAGGCGTGGTGCCAGACCTGATCATCAACCCC 85572 Query 33694 CATGCGTTCCCCTCGCGCATGAC 33716 ||||| | || ||||| ||||| Sbjct 85573 CATGCTATTCCTTCGCGAATGAC 85595 >seq1499 Length=34637 Score = 86.0 bits (94), Expect = 4e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 || ||||| || || || ||| || | || ||||| |||||||| | | ||||||||| Sbjct 6123 GCTTTTGCTGCAGTCGAGGGCATCTTCTTCTCTGGCTCATTTGCATCGGTCTTCTGGCTG 6064 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| ||| || ||||| || || | ||||||||||| | || || || || Sbjct 6063 AAGAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAACTCATCTCGCGGGATGAG 6004 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 || | ||| ||||||||||||| | ||||| Sbjct 6003 GGAATGCACACTGACTTTGCTTGTCTCCTGTT 5972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356226405973771