Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1307 107 2e-18 seq1609 98.7 1e-15 seq1499 89.7 5e-13 seq1188 84.2 2e-11 >seq1307 Length=69414 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||||| || ||||| || ||||| || || ||||| Sbjct 38370 GCCTCCACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCT 38311 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| || ||||| || |||||| |||| ||||| || ||||| || || Sbjct 38310 CAAGGTGCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGG 38251 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||||| || |||||| Sbjct 38250 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGGACTCCAC 38191 Query 139717 CTCAACGGTCACCGTCTTGCCGGT 139740 ||||| ||| | |||||||| || Sbjct 38190 CTCAAGGGTGATGGTCTTGCCAGT 38167 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || || ||||| ||||| || ||| | || | |||||||||||| Sbjct 38625 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGCTGC 38566 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||| ||||| || ||||||||||| || || |||||||| ||| | || Sbjct 38565 TTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTC-CTGAATCTT 38507 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | |||| | || | ||||| | | ||||||||| | ||| | |||||||| || Sbjct 38506 GGCCTTTACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTCTTGCCAGT 38447 Query 139741 CAACGTTTTTACGAATA 139757 || || || |||| || Sbjct 38446 CAGGGTCTTGACGACTA 38430 >seq1609 Length=13884 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 139577 TTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATC 139636 ||||| |||||||||||||||| || ||| ||| |||||||| || || || ||||| Sbjct 498 TTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 439 Query 139637 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCC 139696 | || ||||| || || || || || || ||||| ||| || || | | || Sbjct 438 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 379 Query 139697 ACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAA 139755 | ||||||| || ||| ||||| | ||| | |||||||| |||| ||||| ||||| Sbjct 378 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 320 >seq1499 Length=34637 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| ||| | ||||| |||| || ||||| || |||||| | || | || | Sbjct 6204 GTTCCTTGTATCCGCAAGAAGGCCGACTGGGCTCTGCGATGGATAGCCGACAAGAACTCA 6145 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 ||||||||| |||| || ||||| |||||| ||| || || | || || || || Sbjct 6144 ACTTTTGCCCAACGACTTGTCGCTTTTGCTGCAGTCGAGGGCATCTTCTTCTCTGGCTCA 6085 Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727 ||||| | | || | | || || | ||| | | |||||||| || || ||| ||| Sbjct 6084 TTTGCATCGGTCTTCTGGCTGAAGAAGCGTGGTC-TGATGCCCGGTCTGACCTTTTCCAA 6026 Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGT 52773 ||| | || ||||| || || ||||||||||| || ||||| ||| Sbjct 6025 CGAACTCATCTCGCGGGATGAGGGAATGCACACTGACTTTGCTTGT 5980 >seq1188 Length=31586 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 139577 TTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATC 139636 || || |||||||||||||||| || ||| ||| |||||||| || || || ||||| Sbjct 1359 TTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 1418 Query 139637 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCC 139696 | || ||||| || || || || || || ||||| ||| || || | | || Sbjct 1419 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 1478 Query 139697 ACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAA 139755 | ||||||| || || ||||| | || | |||||||| |||| ||||| ||||| Sbjct 1479 ATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 1537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496053725274400