Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq40 187 4e-42 seq1499 134 2e-26 >seq40 Length=17677 Score = 187 bits (206), Expect = 4e-42 Identities = 606/934 (65%), Gaps = 8/934 (1%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||||||||| || ||| ||| | | || ||| |||| ||| |||||||| | | Sbjct 2278 TCGAACTCGTCCCCATAAATATCTGCAAGACCCGGAGCCTCGTTAGGGCACATCAAAGTC 2337 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 ||||| |||| | | ||||| ||||| |||||||| || |||||||| || | ||| Sbjct 2338 CACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATCCAAAGGGCAAAGAAT 2397 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 ||||||| | | || || || || |||||| | ||| ||||| | | Sbjct 2398 AGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAATCCAGGAATTCAAAG 2457 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 | || | |||||| || || | ||| ||||| | | |||| || || ||||| ||||| Sbjct 2458 ACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCCTCCT 2517 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 ||||| | || | |||||||| || | || | | ||| |||| ||| |||||||| Sbjct 2518 TGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAG 2577 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 80220 | |||||||| || |||||| || | || ||||| || || || Sbjct 2578 GAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGCCA 2637 Query 80221 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCATAGATGCCCTC 80279 || || || || | || ||||| | || || |||||| | || || |||||||| || Sbjct 2638 ATGCCACCGGCAGTCTTCGAGATGAGAGCACA-CGTTTTGAGGGTGTCGTAGATGCCGTC 2696 Query 80280 TATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 80339 || ||||| || |||||| | | || || ||||| || | | || || Sbjct 2697 GATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCC 2756 Query 80340 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 80399 ||||| || |||||||| || ||||| || || |||| | ||||| |||| ||| || Sbjct 2757 AGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGACATGAGATGGTAGGT 2816 Query 80400 CTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459 ||| || | || || | | || || || || ||||||||||| | |||||| Sbjct 2817 CTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGCGACACGCATAATCATGTG 2876 Query 80460 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTT 80519 ||| || | || | | ||| ||| | | | ||| ||| || | ||| || Sbjct 2877 CTGTGGACGCTCGGCCACTTTGCCATTGGTGCGGAGGAGGTATGATCGCTCGAGAGTCTT 2936 Query 80520 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 80579 || ||||| || | ||| |||||||| ||||| | || |||||||||| | || Sbjct 2937 GAACCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGCCGAGTTGAGCTCTTC 2996 Query 80580 CTTATATTTGTTAACTACATCCATGGTGATACTTGAAATA--ATCGGAGAATGTTTCCCA 80637 | || | || || ||| | |||| ||| || || | | || Sbjct 2997 GGCGTGCTTCATGACGGTCTCGTAGGTCTT--TTGAGATATCATGGGGGCTAGCTTGTTG 3054 Query 80638 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 80697 || ||||| || | |||| | ||| ||| || || || |||| |||| || || Sbjct 3055 TTCTTAGGGTTGATGTAGTGGTATAGATCGTCGATGACAGAGGAAAATTGTTTCTTGGTC 3114 Query 80698 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGT 80757 | |||||| || || || || || || | || || | |||||||| || ||||| || Sbjct 3115 TGCTTGTGGAGGTTGGAAACAGCAATGCGTGCTGCAAGGATGGCATAGTCGGGATG-GGT 3173 Query 80758 GTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGA 80790 | | || || |||||| ||||||| ||| || Sbjct 3174 GACGGTCATGTACGCTGCTGTTTCGGCGGCCTGA 3207 >seq1499 Length=34637 Score = 134 bits (148), Expect = 2e-26 Identities = 333/502 (66%), Gaps = 5/502 (1%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 |||||| || ||||| || ||||| || || ||||| || || || ||| || || Sbjct 5689 TTTTTGATAATCACCAACGCGTTTCTCAAAGAAATTGGTCTTGCCCGCCAGAGAGATGGA 5748 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 |||||||| ||||||||||| || | || ||| |||| | ||||| | | Sbjct 5749 CTCCATGAAGTCAAACGGATTCGTCGCTTTGTAATACTTTTGATTACCCAAGGCGAGCAG 5808 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 || || || || || ||||| || ||| ||||| | | ||||| || | || Sbjct 5809 CAGTCGGTCGGCCACGAATTCGATGTATTGCTTCATGAGGTTTGCGTTCATGCCCAATAG 5868 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 | || | |||| | || | |||||| || || ||| || || || || || | Sbjct 5869 ACCACAGGGTAAAGCCTCCGTCAAAAATTCCTGCTCGATGCTGACAGCTTCGGTGATGAC 5928 Query 49908 AGATCTA-ACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 49966 | || |||| | ||| || | ||| || ||| |||| | ||| || | Sbjct 5929 -GTCCTGCACGGCCTGCGGACTGGGGCGGTGCTTTAGGTGTGAGAACAGGAGACAAGCAA 5987 Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026 | || ||||| ||||| || | || |||||||||||||| || || ||||||| Sbjct 5988 AGTCAGTGTGCATTCCCTCATCCCGCGAGATGAGTTCGTTGGAAAAGGTCAGACCGGGCA 6047 Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTT 50086 | || |||||||| || ||||| || | || |||||||| ||||| |||||||| || | Sbjct 6048 TCAGACCACGCTTCTTCAGCCAGAAGACCGATGCAAATGAGCCAGAGAAGAAGATGCCCT 6107 Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTCATGTATCCACT 50143 | ||||| ||||| || ||||||| | || || | | | |||| |||||| Sbjct 6108 CGACTGCAGCAAAAGCGACAAGTCGTTGGGCAAAAGTTGAGTTCTTGTCGGCTATCCATC 6167 Query 50144 TTTGAGCCCAATCGGCCTTCTT 50165 ||||||| ||||||||||| Sbjct 6168 GCAGAGCCCAGTCGGCCTTCTT 6189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718253922857480