Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1499 86.0 6e-12 >seq1499 Length=34637 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||| ||| || | |||||||| | || |||||||| ||||| || | Sbjct 5980 ACAAGCAAAGTCAGTGTGCATTCCCTCATCCCGCGAGATGAGTTCGTTGGAAAAGGTCAG 6039 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 || ||||||| || || || || | ||| || | | |||||||| || || ||||| Sbjct 6040 ACCGGGCATCAGACCACGCTTCTTCAGCCAGAAGACCGATGCAAATGAGCCAGAGAAGAA 6099 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14050 || ||||| ||||||||||| || | | ||||| |||| | || || |||| | Sbjct 6100 GATGCCCTCGACTGCAGCAAAAGCGACAAGTCGTTGGGCAAAAGTTGAGTTCTTGTCGGC 6159 Query 14051 TATCCAT 14057 ||||||| Sbjct 6160 TATCCAT 6166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479718063633800