Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18]
1,657 sequences; 26,990,446 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq40 187 3e-42
seq1499 123 3e-23
>seq40
Length=17677
Score = 187 bits (206), Expect = 3e-42
Identities = 606/934 (65%), Gaps = 8/934 (1%)
Strand=Plus/Plus
Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003
||||||||||| || || || | | || ||| || || || |||||||| | |
Sbjct 2278 TCGAACTCGTCCCCATAAATATCTGCAAGACCCGGAGCCTCGTTAGGGCACATCAAAGTC 2337
Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063
||||| |||| | | ||||| ||||| |||||||| || |||||||| || | |||
Sbjct 2338 CACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATCCAAAGGGCAAAGAAT 2397
Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123
||||||| | | || || || || |||||| | ||| ||||| | |
Sbjct 2398 AGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAATCCAGGAATTCAAAG 2457
Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183
| || | |||||| || || | ||| ||||| | | |||| || || ||||| |||||
Sbjct 2458 ACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCCTCCT 2517
Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243
||||| | || | |||||||| || | || | | ||| |||| ||| ||||||||
Sbjct 2518 TGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAG 2577
Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCT 72303
| |||||||| || |||||| || | || ||||| | || || ||
Sbjct 2578 GAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGCCA 2637
Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCATAGATGCCCTC 72362
|| || || || | || ||||| | || || |||||| | || || |||||||| ||
Sbjct 2638 ATGCCACCGGCAGTCTTCGAGATGAGAGCACA-CGTTTTGAGGGTGTCGTAGATGCCGTC 2696
Query 72363 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 72422
|||||||| ||| |||||| | | || || ||||| || | | || ||
Sbjct 2697 GATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCC 2756
Query 72423 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 72482
||||| || |||||||| || ||||| || || |||| | ||||| |||| ||| ||
Sbjct 2757 AGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGACATGAGATGGTAGGT 2816
Query 72483 CTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATG 72542
||| || | || || | | ||||| || || ||||||||||| | ||| ||
Sbjct 2817 CTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGCGACACGCATAATCATGTG 2876
Query 72543 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 72602
||| || | || | | ||| ||| | | | ||| ||| || | ||| ||
Sbjct 2877 CTGTGGACGCTCGGCCACTTTGCCATTGGTGCGGAGGAGGTATGATCGCTCGAGAGTCTT 2936
Query 72603 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662
|| ||||| || | ||| |||||||| ||||| | || |||| ||||| | ||
Sbjct 2937 GAACCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGCCGAGTTGAGCTCTTC 2996
Query 72663 CTTATATTTGTTAACTATATCCATGGTGATACTTGAAATA--ATCGGAGAATGTTTCCCA 72720
| || | || | || ||| | |||| ||| || || | | ||
Sbjct 2997 GGCGTGCTTCATGACGGTCTCGTAGGTCTT--TTGAGATATCATGGGGGCTAGCTTGTTG 3054
Query 72721 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 72780
|| ||||| || | |||| | ||| ||| || || || |||| |||| || ||
Sbjct 3055 TTCTTAGGGTTGATGTAGTGGTATAGATCGTCGATGACAGAGGAAAATTGTTTCTTGGTC 3114
Query 72781 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGT 72840
| |||||| || || || || || || | || || || |||||||| || ||||| ||
Sbjct 3115 TGCTTGTGGAGGTTGGAAACAGCAATGCGTGCTGCAAGGATGGCATAGTCGGGATG-GGT 3173
Query 72841 GTAGTACAAGT-GGCTGCTATTTCTGCTGCCAGA 72873
| | || || |||||| |||| || ||| ||
Sbjct 3174 GACGGTCATGTACGCTGCTGTTTCGGCGGCCTGA 3207
>seq1499
Length=34637
Score = 123 bits (136), Expect = 3e-23
Identities = 313/471 (66%), Gaps = 4/471 (1%)
Strand=Plus/Plus
Query 41747 TTGTCTTCTTGA-GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 41805
|||| || |||| | ||| || || |||||| || ||||| || ||||| || || ||
Sbjct 5663 TTGT-TTGTTGACGCCATTACACCTGCTTTTTGATAATCACCAACGCGTTTCTCAAAGAA 5721
Query 41806 ATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA 41865
||| ||||| || ||| || || |||||||| ||||||||||| || | || ||
Sbjct 5722 ATTGGTCTTGCCCGCCAGAGAGATGGACTCCATGAAGTCAAACGGATTCGTCGCTTTGTA 5781
Query 41866 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTT 41925
| |||| | ||||| | | || || || || | |||||| || ||| ||
Sbjct 5782 ATACTTTTGATTACCCAAGGCGAGCAGCAGTCGGTCGGCCACGAATTCGATGTATTGCTT 5841
Query 41926 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 41985
||| | | ||||| || | || | || | |||| | || | |||||| ||
Sbjct 5842 CATGAGGTTTGCGTTCATGCCCAATAGACCACAGGGTAAAGCCTCCGTCAAAAATTCCTG 5901
Query 41986 TTCAATAGAGACCGCGTCTGTTATAATAGATCTT-ACTGTTTCTTCACTCGGTGGATACA 42044
|| || ||| || || || || | | || || | | ||| || | | |
Sbjct 5902 CTCGATGCTGACAGCTTCGGTGATGAC-GTCCTGCACGGCCTGCGGACTGGGGCGGTGCT 5960
Query 42045 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTA 42104
|| ||| |||| | ||| || || || ||||| |||||||| | || |
Sbjct 5961 TTAGGTGTGAGAACAGGAGACAAGCAAAGTCAGTGTGCATTCCCTCATCCCGCGAGATGA 6020
Query 42105 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACG 42164
|||||||||||| || || |||||||| || |||||||| || ||||| || | || |
Sbjct 6021 GTTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTTCTTCAGCCAGAAGACCGATG 6080
Query 42165 CAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTC 42215
||||||| ||||| |||||||| || || ||||| ||||| || | |||||
Sbjct 6081 CAAATGAGCCAGAGAAGAAGATGCCCTCGACTGCAGCAAAAGCGACAAGTC 6131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671125299029320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |