Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq40 187 3e-42 seq1499 123 3e-23 >seq40 Length=17677 Score = 187 bits (206), Expect = 3e-42 Identities = 606/934 (65%), Gaps = 8/934 (1%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 ||||||||||| || || || | | || ||| || || || |||||||| | | Sbjct 2278 TCGAACTCGTCCCCATAAATATCTGCAAGACCCGGAGCCTCGTTAGGGCACATCAAAGTC 2337 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 ||||| |||| | | ||||| ||||| |||||||| || |||||||| || | ||| Sbjct 2338 CACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATCCAAAGGGCAAAGAAT 2397 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 ||||||| | | || || || || |||||| | ||| ||||| | | Sbjct 2398 AGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAATCCAGGAATTCAAAG 2457 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 | || | |||||| || || | ||| ||||| | | |||| || || ||||| ||||| Sbjct 2458 ACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCCTCCT 2517 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 ||||| | || | |||||||| || | || | | ||| |||| ||| |||||||| Sbjct 2518 TGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAG 2577 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCT 72303 | |||||||| || |||||| || | || ||||| | || || || Sbjct 2578 GAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGCCA 2637 Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCATAGATGCCCTC 72362 || || || || | || ||||| | || || |||||| | || || |||||||| || Sbjct 2638 ATGCCACCGGCAGTCTTCGAGATGAGAGCACA-CGTTTTGAGGGTGTCGTAGATGCCGTC 2696 Query 72363 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 72422 |||||||| ||| |||||| | | || || ||||| || | | || || Sbjct 2697 GATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCC 2756 Query 72423 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 72482 ||||| || |||||||| || ||||| || || |||| | ||||| |||| ||| || Sbjct 2757 AGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGACATGAGATGGTAGGT 2816 Query 72483 CTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATG 72542 ||| || | || || | | ||||| || || ||||||||||| | ||| || Sbjct 2817 CTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGCGACACGCATAATCATGTG 2876 Query 72543 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 72602 ||| || | || | | ||| ||| | | | ||| ||| || | ||| || Sbjct 2877 CTGTGGACGCTCGGCCACTTTGCCATTGGTGCGGAGGAGGTATGATCGCTCGAGAGTCTT 2936 Query 72603 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662 || ||||| || | ||| |||||||| ||||| | || |||| ||||| | || Sbjct 2937 GAACCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGCCGAGTTGAGCTCTTC 2996 Query 72663 CTTATATTTGTTAACTATATCCATGGTGATACTTGAAATA--ATCGGAGAATGTTTCCCA 72720 | || | || | || ||| | |||| ||| || || | | || Sbjct 2997 GGCGTGCTTCATGACGGTCTCGTAGGTCTT--TTGAGATATCATGGGGGCTAGCTTGTTG 3054 Query 72721 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 72780 || ||||| || | |||| | ||| ||| || || || |||| |||| || || Sbjct 3055 TTCTTAGGGTTGATGTAGTGGTATAGATCGTCGATGACAGAGGAAAATTGTTTCTTGGTC 3114 Query 72781 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGT 72840 | |||||| || || || || || || | || || || |||||||| || ||||| || Sbjct 3115 TGCTTGTGGAGGTTGGAAACAGCAATGCGTGCTGCAAGGATGGCATAGTCGGGATG-GGT 3173 Query 72841 GTAGTACAAGT-GGCTGCTATTTCTGCTGCCAGA 72873 | | || || |||||| |||| || ||| || Sbjct 3174 GACGGTCATGTACGCTGCTGTTTCGGCGGCCTGA 3207 >seq1499 Length=34637 Score = 123 bits (136), Expect = 3e-23 Identities = 313/471 (66%), Gaps = 4/471 (1%) Strand=Plus/Plus Query 41747 TTGTCTTCTTGA-GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 41805 |||| || |||| | ||| || || |||||| || ||||| || ||||| || || || Sbjct 5663 TTGT-TTGTTGACGCCATTACACCTGCTTTTTGATAATCACCAACGCGTTTCTCAAAGAA 5721 Query 41806 ATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA 41865 ||| ||||| || ||| || || |||||||| ||||||||||| || | || || Sbjct 5722 ATTGGTCTTGCCCGCCAGAGAGATGGACTCCATGAAGTCAAACGGATTCGTCGCTTTGTA 5781 Query 41866 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTT 41925 | |||| | ||||| | | || || || || | |||||| || ||| || Sbjct 5782 ATACTTTTGATTACCCAAGGCGAGCAGCAGTCGGTCGGCCACGAATTCGATGTATTGCTT 5841 Query 41926 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 41985 ||| | | ||||| || | || | || | |||| | || | |||||| || Sbjct 5842 CATGAGGTTTGCGTTCATGCCCAATAGACCACAGGGTAAAGCCTCCGTCAAAAATTCCTG 5901 Query 41986 TTCAATAGAGACCGCGTCTGTTATAATAGATCTT-ACTGTTTCTTCACTCGGTGGATACA 42044 || || ||| || || || || | | || || | | ||| || | | | Sbjct 5902 CTCGATGCTGACAGCTTCGGTGATGAC-GTCCTGCACGGCCTGCGGACTGGGGCGGTGCT 5960 Query 42045 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTA 42104 || ||| |||| | ||| || || || ||||| |||||||| | || | Sbjct 5961 TTAGGTGTGAGAACAGGAGACAAGCAAAGTCAGTGTGCATTCCCTCATCCCGCGAGATGA 6020 Query 42105 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACG 42164 |||||||||||| || || |||||||| || |||||||| || ||||| || | || | Sbjct 6021 GTTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTTCTTCAGCCAGAAGACCGATG 6080 Query 42165 CAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTC 42215 ||||||| ||||| |||||||| || || ||||| ||||| || | ||||| Sbjct 6081 CAAATGAGCCAGAGAAGAAGATGCCCTCGACTGCAGCAAAAGCGACAAGTC 6131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671125299029320