Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1307 89.7 5e-13 >seq1307 Length=69414 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||| ||| | ||||| ||||| | |||||| || Sbjct 38847 GTGGATTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCTAATTGTTTGCCG 38788 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| || || || || || || ||||||||||| || || || || Sbjct 38787 GCGAAGATCAAGCGCTGTTGGTCCGGGGGGATGCCTTCTTTATCTTGTATCTTGGCCTTG 38728 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||||||||| | ||| | |||||||| ||||| || Sbjct 38727 ACATTGTCGATTGTGTCTGAAGATTCTACTTCGAGAGTGATGGTCTTGCCTGTCAAGGTC 38668 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 38667 TTGACGAAGATTTGCAT 38651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || | ||||| || ||||| ||||| |||||||| ||| Sbjct 38650 GCCACCACGGAGACGGAGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 38591 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | ||||||||| || || || || |||| ||||| || ||||||||||| Sbjct 38590 GAGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGG 38531 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| ||| || |||| | || | ||||||| | || || Sbjct 38530 GATACCCTCTTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCCAC 38471 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATA 143177 || | || | |||||||| |||| || || |||| || Sbjct 38470 CTCCAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGACTA 38430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507003898464240