Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1499 150 3e-31 >seq1499 Length=34637 Score = 150 bits (166), Expect = 3e-31 Identities = 213/295 (72%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 125013 CATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTC 125072 ||| | || ||| | |||||||| ||||| |||||||||| ||||| | |||||| | Sbjct 6598 CATCAGATATGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAAGAGATT 6539 Query 125073 GATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT 125132 || || ||||||||||| |||| ||| | | | | | || |||||| | || Sbjct 6538 GACCTCTCCAAGGACCTTCACGACTGGAACAACAGACTCAACGACGATGAGCGTTACTTC 6479 Query 125133 ATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTT 125191 || |||||| | ||||| ||||| |||| || ||||| || |||||||| || || ||| Sbjct 6478 ATCTCGCACGTCTTGGCATTCTTCGCCGCATCTGATGGCATTGTCAACGAGAACCTCGTT 6419 Query 125192 GACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAA 125250 || || ||| | ||| || || || |||| ||| ||||| ||||| ||||||| Sbjct 6418 GA-GCGCTTCAGTGGTGAGGTGCAAATCCCCGAGG-CTCGCTGCTTCTACGGCTTCCAAA 6361 Query 125251 TCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||||||| |||||| | || || |||| ||||| ||||| |||| ||||| Sbjct 6360 TCATGATGGAGAACATTCATTCRGAAACATACTCGCTTCTGATCGACACCTACAT 6306 Score = 100 bits (110), Expect = 4e-16 Identities = 333/512 (65%), Gaps = 27/512 (5%) Strand=Plus/Minus Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 || || | ||| || || ||||| | |||| | || ||||| | ||| | || || Sbjct 6204 GTTCCTTGTATCCGCAAGAAGGCCGACTGGGCTCTGCGATGGATAGCCGACAAGAACTCA 6145 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 | | ||| | |||| || || || || || || |||||||||||||| || || Sbjct 6144 ACTTTTGCCCAACGACTTGTCGCTTTTGCTGCAGTCGAGGGCATCTTCTTCTCTGGCTCA 6085 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 ||||| | |||| ||||| |||||||| || || |||||||| ||||| ||| Sbjct 6084 TTTGCATCGGTCTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAAC 6025 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAA 125590 || | || || || || ||||| | ||| ||||||||| ||| ||||| || || Sbjct 6024 GAACTCATCTCGCGGGATGAGGGAATGCACACTGACTTTGCTTGTCTCCTGTTCTCACAC 5965 Query 125591 CT--ATCTGCGTCCCGAGT--GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646 || | | || ||| ||| |||| || || ||| | ||| | |||| Sbjct 5964 CTAAAGCACCG-CCCCAGTCCGCAG-----GCCGTG--CAGGACGTCA------TCACCG 5919 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC----GGTCAGCATGATT 125702 | || || || || || || || ||| | || || | |||| |||| | | Sbjct 5918 AAGCTGTCAGCATCGAGCAGGAATTTTTGACGGAGGCTTTACCCTGTGGTC----TATTG 5863 Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 ||||||||| || || ||| | ||||| || || ||||| || || || ||| | Sbjct 5862 GGCATGAACGCAAACCTCATGAAGCAATACATCGAATTCGTGGCCGACCGACTGCTGCTC 5803 Query 125763 GAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATA 125822 | ||| | | ||| |||||| || | |||||| ||||| |||||| ||| Sbjct 5802 GCCTTGGGTAATCAAAAGTATTACAAAGCGACGAATCCGTTTGACTTCATGGAGTCCATC 5743 Query 125823 TCACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854 || || | ||| |||||||| || || ||||| Sbjct 5742 TCTCTGGCGGGCAAGACCAATTTCTTTGAGAA 5711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741043850811320