Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1307 131 4e-25 >seq1307 Length=69414 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||| || || || || ||||| || ||||| | |||||| Sbjct 38634 AGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 38575 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||||||||| ||||| || || ||||| ||| Sbjct 38574 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCC 38515 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || |||||||| || | ||| || || || ||||| || ||||| ||| Sbjct 38514 TGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTC 38455 Query 104528 TTACCAGTAAGTGTTTTTAC 104547 || ||||| || || || || Sbjct 38454 TTGCCAGTCAGGGTCTTGAC 38435 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||||| || ||||||||||| || || ||||| Sbjct 38880 ATTCCACCGCGCAGACGGAGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCG 38821 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||||| |||||| || || || || | | |||||| || || Sbjct 38820 GAGAGTGTGCGGCCATCTTCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGG 38761 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| || ||||| || || ||||| || | || || || |||| Sbjct 38760 GGGATGCCTTCTTTATCTTGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCT 38701 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || || | || || || || || ||||| Sbjct 38700 ACTTCGAGAGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 Score = 105 bits (116), Expect = 2e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||| ||||| | || | |||||| || || || |||||| Sbjct 38339 GTGGACTCCTTCTGAATATTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTTCCA 38280 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||||||| || || |||||||| || ||||| ||||| || || Sbjct 38279 GCAAAGATGAGACGCTGTTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTG 38220 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || | || ||| | || ||||| || || || ||||| ||||| Sbjct 38219 ACGTTATCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGT 38167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151373955452156