Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq40 163 4e-35 seq1499 131 2e-25 >seq40 Length=17677 Score = 163 bits (180), Expect = 4e-35 Identities = 601/934 (64%), Gaps = 8/934 (1%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 ||||||||||| || ||| || | | || ||| || | || |||||||| | | Sbjct 2278 TCGAACTCGTCCCCATAAATATCTGCAAGACCCGGAGCCTCGTTAGGGCACATCAAAGTC 2337 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 ||||| || | | | ||||| ||||| |||||||| || |||||||| || | ||| Sbjct 2338 CACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATCCAAAGGGCAAAGAAT 2397 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 ||||||| | | ||| || || || |||||| | ||| ||||| | | Sbjct 2398 AGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAATCCAGGAATTCAAAG 2457 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 | || | |||||| || || | ||| ||||| | | |||| || || ||||| ||||| Sbjct 2458 ACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCCTCCT 2517 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 ||||| | || | |||||||| || | || | | ||| |||| ||| || || || Sbjct 2518 TGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAG 2577 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497 |||||||| || |||||| || | || ||||| || || || Sbjct 2578 GAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGCCA 2637 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTGTCATAGATACCCTC 63556 || || || || | || ||||| | || || |||||| | ||||| ||||| || || Sbjct 2638 ATGCCACCGGCAGTCTTCGAGATGAGAGCACA-CGTTTTGAGGGTGTCGTAGATGCCGTC 2696 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616 || ||||| || |||||| | | || || ||||| || | | || || Sbjct 2697 GATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCC 2756 Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676 ||||| || |||||||| || ||||| || || |||| | ||| | |||| ||| || Sbjct 2757 AGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGACATGAGATGGTAGGT 2816 Query 63677 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63736 ||| || | ||| || | | || || || || ||||||||||| | |||||| Sbjct 2817 CTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGCGACACGCATAATCATGTG 2876 Query 63737 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63796 ||| || | || | | ||| || | | | ||| ||| || | ||| || Sbjct 2877 CTGTGGACGCTCGGCCACTTTGCCATTGGTGCGGAGGAGGTATGATCGCTCGAGAGTCTT 2936 Query 63797 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63856 || ||||| || | ||| |||||||| ||||| | || |||||||||| | || Sbjct 2937 GAACCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGCCGAGTTGAGCTCTTC 2996 Query 63857 CTTATATTTGTTAACTATATCCATGGTGATACTTGAAATA--ATCGGAGAATGTTTCCCA 63914 | || | || | || ||| | |||| ||| || || | | || Sbjct 2997 GGCGTGCTTCATGACGGTCTCGTAGGTCTT--TTGAGATATCATGGGGGCTAGCTTGTTG 3054 Query 63915 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 63974 || ||||| || | |||| | ||| ||| || || || |||| |||| || || Sbjct 3055 TTCTTAGGGTTGATGTAGTGGTATAGATCGTCGATGACAGAGGAAAATTGTTTCTTGGTC 3114 Query 63975 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGT 64034 | |||||| || || || || || || | || || || |||||||| || ||||| || Sbjct 3115 TGCTTGTGGAGGTTGGAAACAGCAATGCGTGCTGCAAGGATGGCATAGTCGGGATG-GGT 3173 Query 64035 GTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGA 64067 | | || || |||||| ||||||| ||| || Sbjct 3174 GACGGTCATGTACGCTGCTGTTTCGGCGGCCTGA 3207 >seq1499 Length=34637 Score = 131 bits (144), Expect = 2e-25 Identities = 297/444 (67%), Gaps = 2/444 (0%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 |||||| || ||||| || ||||| || || ||||| || || || ||| || || Sbjct 5689 TTTTTGATAATCACCAACGCGTTTCTCAAAGAAATTGGTCTTGCCCGCCAGAGAGATGGA 5748 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 |||||||| ||||||||||| || | || ||| |||| | ||||| | | Sbjct 5749 CTCCATGAAGTCAAACGGATTCGTCGCTTTGTAATACTTTTGATTACCCAAGGCGAGCAG 5808 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 || || || || |||||||| || ||| ||||| | | ||||| || | || Sbjct 5809 CAGTCGGTCGGCCACGAATTCGATGTATTGCTTCATGAGGTTTGCGTTCATGCCCAATAG 5868 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 | || | |||| | || | |||||| || || ||| || || || || || | Sbjct 5869 ACCACAGGGTAAAGCCTCCGTCAAAAATTCCTGCTCGATGCTGACAGCTTCGGTGATGAC 5928 Query 33252 AGATCTA-ACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 33310 | || |||| | ||| || | ||| || ||| |||| | ||| || | Sbjct 5929 -GTCCTGCACGGCCTGCGGACTGGGGCGGTGCTTTAGGTGTGAGAACAGGAGACAAGCAA 5987 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 | || ||||| ||||| || | || |||||||||||||| || || ||||||| Sbjct 5988 AGTCAGTGTGCATTCCCTCATCCCGCGAGATGAGTTCGTTGGAAAAGGTCAGACCGGGCA 6047 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTT 33430 | || |||||||| || ||||| || | || || ||||| ||||| |||||||| || | Sbjct 6048 TCAGACCACGCTTCTTCAGCCAGAAGACCGATGCAAATGAGCCAGAGAAGAAGATGCCCT 6107 Query 33431 CTACTGCAGCAAAGGCAATAAGTC 33454 | ||||||||||| || | ||||| Sbjct 6108 CGACTGCAGCAAAAGCGACAAGTC 6131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622934297206120