Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1499 105 6e-18 seq1307 98.7 1e-15 >seq1499 Length=34637 Score = 105 bits (116), Expect = 6e-18 Identities = 160/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 119646 TACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATA 119705 || || || || ||||| ||||| ||||| ||||||||| | ||||| ||| | ||| Sbjct 5696 TAATCACCAACGCGTTTCTCAAAGAAATTGGTCTTGCCCGCCAGAGAGATGGACTCCATG 5755 Query 119706 AACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGA 119765 || || || ||||| | | ||| ||| ||| | | ||||| ||| || |||||| Sbjct 5756 AAGTCAAACGGATTCGTCGCTTTGTAATACTTTTGATTACCCAAGGCGAGCAGCAGTCGG 5815 Query 119766 TCTGCCACAAACTCGATGTATTCGCACATG--GATTGCGAATTCATGCCCAACATAGCGA 119823 || ||||| || |||||||||| |||| | ||||| ||||||||||| | | | Sbjct 5816 TCGGCCACGAATTCGATGTATTGCTTCATGAGGTTTGCG--TTCATGCCCAATAGACCAC 5873 Query 119824 CCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 |||||||| | || || || |||| || ||| ||| ||||| Sbjct 5874 AGGGTAAAGCCTCCGTCAAAAATTCCTGCTCGATGCTGACAGCTTC 5919 >seq1307 Length=69414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || |||||| |||||||| || || |||||||||||| Sbjct 38483 GACACCATCGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAA 38542 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || |||||||| | | | || |||||| ||| Sbjct 38543 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTCTCTCCGACTACAAC 38602 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||| ||| | ||||| ||||| Sbjct 38603 ATCCAAAAGGAATCCACTCTTCATCTCGTCCT 38634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478652485705040