Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq40 280 4e-70 >seq40 Length=17677 Score = 280 bits (310), Expect = 4e-70 Identities = 1061/1661 (64%), Gaps = 79/1661 (5%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| | || || ||| ||||||||| || | | || |||||||| || Sbjct 2789 TTCACCCACGCGTCCCCTACCTTGTTCAATGCTGGCACCCCACAGCCTCAGATGTCCTCA 2730 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | | |||||||| ||| ||||| || |||| ||||| || || | Sbjct 2729 TGCTTCTTGATCGACATGAAGGAGGATAGTATCGACGGCATCTACGACACCCTCAAAACG 2670 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 |||||||| || || |||| ||| || || ||||| | |||||| |||| || Sbjct 2669 TGTGCTCTCATCTCGAAGACTGCCGGTGGCATTGGCCTGAACATCCACCGCATTCGCGCT 2610 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 |||| || | || | ||||| || | ||| ||||| | ||||| ||||| || Sbjct 2609 ACAGGCTCGT-ATATCGGGGGCACCAATGGCTCCTCCAATGGCATTGTTCCTATGCTACG 2551 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || |||| || || | || ||||| || || || ||||| || || || Sbjct 2550 CGTCTTCAACAACACCGCCCGCTATGTCGATCAAGGAGGCAACAAGCGTCCCGGAGCTTT 2491 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 || ||||| |||||||| |||||||| | ||||| || || || | ||||| || Sbjct 2490 CGCCATGTACCTCGAGCCATGGCATGCCGACGTCTTTGAATTCCTGGATTTGCGGAAGAA 2431 Query 363906 -CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 ||||| || || ||| | || || || ||||| |||| ||| |||||| | | || | Sbjct 2430 TCACGGCAAG-GAAGAAGTCCGCGCTCGAGATCTATTCTTTGCCCTTTGGATCCCGGATC 2372 Query 363965 ATTTTATGAAGCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021 || |||||||| || || || ||| || ||| | | | ||||| |||| Sbjct 2371 TCTTCATGAAGCGAGTCGAAGCCAATGGTGAG---TGGACTTTGATGTGCCCTAACGAGG 2315 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA----- 364076 ||| |||||| | ||| | | || ||||| | | || || || || |||| Sbjct 2314 CTCCGGGTCTTGCAGATATTTATGGGGACGAGTTCGAGGCGCTGTATGAGAAGTTAGTAT 2255 Query 364077 --------------TGAATCGG-----------AGG---------------GAAAG---- 364092 || || || ||| ||||| Sbjct 2254 TTTCCTCCGACTGTTGCATGGGTCTTCTCGCTAAGGAAGTCGTAGATATGAGAAAGAGGG 2195 Query 364093 ----GCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGAT 364148 | ||| ||||| || || ||||||||||||| ||||| | || | |||| Sbjct 2194 ACGAGGTCGGAAGACGATCAAAGCCCAGAAGCTATGGTACTCCATCCTAGAGGCTCAGAC 2135 Query 364149 TGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCA 364208 ||||| || | || | ||| | ||||| ||| | |||||||||| ||||||| | Sbjct 2134 CGAGACTGGCAACCCGTTCATGCTATACAAGGATGCCGCCAACCGCAAGAGCAACCAGAA 2075 Query 364209 GCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTC 364267 | |||| ||||| || | | || | ||| | || || |||||||| ||||||||||| | Sbjct 2074 GAACCTGGGTACCATCC-GTAGCTCCAACTTGTGCACGGAGATTATCGAATACACCGCGC 2016 Query 364268 CCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATG 364327 | || ||| ||| || || || || || || | || || || | || ||| | | | Sbjct 2015 CTGATGAGGTTGCAGTCTGCAATCTGGCTTCCCTTGCCCTCCCAACCTTCGTAGATGCAG 1956 Query 364328 GTACTTTTGACCACCA----GC--ATCTTTATGACGTAACCTATCATGCTACTTGCAATC 364381 | | || || | || | || | || || ||| | || | || | Sbjct 1955 CTCGTGGAGAGTACGACTTTGCCAAACTACACGAGGTCACCCGGGTGGTGACAAGAAACC 1896 Query 364382 TCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGC 364441 | |||| | ||||| || || ||||| | |||||| || | ||| | | Sbjct 1895 TGAACAAAATCATCGAGGTCAACTACTATCCTGTAGAAGAAGCCAAGAGGAGCAATTTCC 1836 Query 364442 GTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGA 364501 | ||||| ||| | |||||||| ||||| || || || || | || | ||| | Sbjct 1835 GCCATCGACCGGTCGGTCTTGGGGTACAAGGACTTGCCGATGCATTCCTCGCCCTCCGAA 1776 Query 364502 TGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATT 364561 || | || || ||||| || || | || || ||| |||| |||||||| || || Sbjct 1775 TGCCGTTCGACTCGCCGGAAGCAAGGCAGCTGAACAAGCAGATTTTTGAAACCATCTACC 1716 Query 364562 TTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAA-ACCAAGGGAAAGTACTCTACTTAT 364620 |||| | || || || || || | || ||| | | || | ||||| || || Sbjct 1715 ACGCCGGCCTCACCGCATCTTGCGAGATCGCCAAAGAACTCGGCCCA-TACTCCACCTAC 1657 Query 364621 GAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCT 364680 || || |||||| | || || || | |||| ||| | ||| ||||| || || Sbjct 1656 GAAGGCTCCCCTGTCTCCCAAGGGATCCTCCAACAAGATATGTGGGGCGTCACTCCGTCC 1597 Query 364681 GTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCC 364740 | || ||| ||||||||||||| || |||||| | ||||| ||| |||||| ||| Sbjct 1596 GACCTCTGGGACTGGGATACGCTCCGGTCCAACATCGCCAAGCACGGTGTTCGCAATTCC 1537 Query 364741 CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGC 364800 ||| | || |||||||||||||| || || | ||||||||||| ||||| || ||| Sbjct 1536 CTCCTCGTGGCCCCCATGCCCACGGCCTCGACATCCCAGATCCTCGGCAACAATGAATGC 1477 Query 364801 TTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTA 364860 |||||||| | || ||| | ||||| || || || || | || ||||||| ||| Sbjct 1476 TTCGAACCTTACACCTCGAATATATATTCCCGTCGTGTGCTAGCGGGCGAATTTCAGGTC 1417 Query 364861 GTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG 364920 || ||| | || |||||||||| ||| || || ||| |||| ||||||| Sbjct 1416 GTCAATCCTTGGCTGCTCAAGGATCTCGTCGATATGGGCCTCTGGTCGGACAACATGAAG 1357 Query 364921 AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTG 364980 ||| |||||||||| || || | |||||||| || | || | || | Sbjct 1356 AACCGCATCATCGCCGACGGCGGATCCATCCAGAACATCCCCAACATCCCCGCTGACATC 1297 Query 364981 AAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTG---ATATGGCG 365037 ||| | | ||||| || || ||||| || | ||| | |||| | ||||| Sbjct 1296 AAGTCGCTCTACAAGACGGTCTGGGAGATCAGCCAGCG---CCAGATTGTGCAAATGGCC 1240 Query 365038 GCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCA 365097 ||||| |||||||| |||||| ||| |||||| || ||| | ||||| | || Sbjct 1239 GCCGACCGCGGTGCCTTTATCGATCAATCCCAGTCCTTGAACATTCACATGAAGGACCCC 1180 Query 365098 ACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 || | ||| | ||||| ||||||||| ||| ||||| Sbjct 1179 ACAATGGGTAAGATAACATCGATGCATTTCGCCGGCTGGAA 1139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303325929395774