Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1499 100 2e-16 seq1307 100 2e-16 seq1609 89.7 4e-13 >seq1499 Length=34637 Score = 100 bits (110), Expect = 2e-16 Identities = 166/232 (72%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 104589 TTTG-TATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTAT 104647 |||| || || || || ||||| ||||| ||||| ||||||||| ||||||| || | Sbjct 5691 TTTGATAATCACCAACGCGTTTCTCAAAGAAATTGGTCTTGCCCGCCAGAGAGATGGACT 5750 Query 104648 TCATAAATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGT-AGCCAAGCTCGATCAAC 104706 ||| || || || |||||| | || |||| |||| | | ||||| ||| || | Sbjct 5751 CCATGAAGTCAAACGGATTCGTCGCTTTGTAATACTTTTGATTACCCAAGG-CGAGCAGC 5809 Query 104707 AGTCGATCCGCCACAAATTCGATGTACTCGCACATAGAATGTGCATTCATGCCCAGCATT 104766 ||||| || ||||| ||||||||||| | ||| | ||| |||||||||| || Sbjct 5810 AGTCGGTCGGCCACGAATTCGATGTATTGCTTCATGAGGTTTGCGTTCATGCCCA--ATA 5867 Query 104767 G-CGAC-GGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATGTCCACGGCTTC 104816 | | || ||||||||| | || ||||| || | ||||||| || ||||| Sbjct 5868 GACCACAGGGTAAAGCCTCCGTCAAAAATTCCTGCTCGATGCTGACAGCTTC 5919 >seq1307 Length=69414 Score = 100 bits (110), Expect = 2e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | |||||| | || || ||| | ||||||||||| | || || Sbjct 38447 ACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTCGGACACCATCGACAATGTAAAGGCC 38506 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| |||||||| || || ||||||||||||||| | || || | || ||||||| Sbjct 38507 AAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAACAGCGTCTCATCTTCGCCGGCAAG 38566 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 || |||||||| | | | | || ||| || ||||| ||||| ||||| || ||||| Sbjct 38567 CAGCTCGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAAAGGAATCCACTCTTCAT 38626 >seq1609 Length=13884 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 || || ||||| | || || || | || ||| |||| |||||| || |||||||||| Sbjct 320 TTCGTCAAAACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATC 379 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | ||||| ||||| ||||| || || || || || || || ||| | || Sbjct 380 GACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGCTTG 439 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAA 24178 || | || |||||||| ||||| || | || | | | |||||||||||||| ||||| Sbjct 440 ATCTTCGCGGGCAAGCAGCTCGAGGACGGGAGGACCTTGAGCGATTATAACATCCAAAA 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429927317576835