Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq40 150 2e-31 seq1609 132 5e-26 seq1188 120 3e-22 seq59 95.1 1e-14 seq1307 91.5 1e-13 >seq40 Length=17677 Score = 150 bits (166), Expect = 2e-31 Identities = 491/755 (65%), Gaps = 26/755 (3%) Strand=Plus/Plus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 |||||||||||||||| ||||| || | ||||||||| |||| | || || ||| | | Sbjct 1410 GATTGACGACCTGAAATTCGCCCGCTAGCACACGACGGGAATATATATTCGAGGTGTAAG 1469 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 |||| || | || || ||||| ||||| || | |||| || ||||||||| |||| Sbjct 1470 GTTCGAAGCATTCATTGTTGCCGAGGATCTGGGATGTCGAGGCCGTGGGCATGGGGGCCA 1529 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | | |||||||| | |||||||| ||||| | |||||| |||| |||| Sbjct 1530 CGAGGAGGGAATTGCGAACACCGTGCTTGGCGATGTTGGACCGGAGCGTATCCCAGTCCC 1589 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | || | ||| | ||| ||||||| || | || | || || | | | | ||| Sbjct 1590 AGAGGTCGGACGGAGTGACGCCCCACATATCTTGTTGGAGGATCCCTTGGGAGACAGGGG 1649 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGT--TTTGGCGAGCTCGCAACTCGCCTCCAG 145353 ||||| ||| ||| || || ||| |||||||| ||||||| || || Sbjct 1650 AGCCTTCGTAGGTGGAGTA--TGGGCCGAGTTCTTTGGCGATCTCGCAAGATGCGGTGAG 1707 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 || || || || || || ||| ||| |||| ||| || | ||||| || Sbjct 1708 GCCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTCAGCTGCCTTGCTTCCGGCGAGTC 1767 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 | ||||||| || || | || |||||||| || || |||| || | |||| || Sbjct 1768 GAACGGCATTCGGAGGGCGAGGAATGCATCGGCAAGTCCTTGTACCCCAAGACCGACCGG 1827 Query 145474 CCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGTCGATAA 145532 ||||| | |||||| || | || || | |||||| | | | || ||||| | Sbjct 1828 TCGATGGCGGAAATTGCTCCTCTTGGCTTCTTCTACAGGATAGTAGTTGAC-CTCGATGA 1886 Query 145533 TTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC- 145591 |||| |||| ||||| || ||| || | | | | || ||||||| || Sbjct 1887 TTTTGTTCAGGTTTCTTGTCACCACCCGGGTGACCTCGTGTAGTTTGGCAAAGTCGTACT 1946 Query 145592 -----CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAA 145646 ||||| | || |||| || | || ||| | || |||| ||| || | Sbjct 1947 CTCCACGAGCTGCATCTACGA------AGGTTGGGAGGGCAAGGGAAGCCAGATTGCAGA 2000 Query 145647 CTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACAT 145702 |||| ||| || |||| || |||||| | ||||| | |||||| || ||||| Sbjct 2001 CTGCAACCTCATCAGGCG-CGGTGTATTCGATAATCTCCGTGCACAAGTTGGAGCTAC-- 2057 Query 145703 TTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATG 145762 |||||| ||||| || | ||| || || || | |||| || |||||||| |||||| Sbjct 2058 -GGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTATAGCATG 2116 Query 145763 TACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT 145797 |||| ||||||||| ||| | ||| | ||| Sbjct 2117 AACGGGTTGCCAGTCTCGGTCTGAGCCTCTAGGAT 2151 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 146266 GAGCGTCTCGTAGATGCCGTCAATGCTATC--GCTTCGAATGCCGAGCAGAAAGCACGAG 146323 ||| || |||||||||||||| || ||||| |||| ||| ||| || ||||| ||| Sbjct 2676 GAGGGTGTCGTAGATGCCGTCGATACTATCCTCCTTC--ATGTCGATCAAGAAGCATGAG 2733 Query 146324 CACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATT 146383 ||||||| | | || || || || |||||| || ||| |||||| || || | Sbjct 2734 GACATCTGAGGCTGTGGGGTGCCAGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTAT 2793 Query 146384 TTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCC 146443 || | ||| | | || || ||||| | | | |||| |||| | || || ||| Sbjct 2794 TTCTGAGACATGAGATGGTAGGTCTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCC 2853 Query 146444 AAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCACTT 146486 | |||||| ||||| | |||||| || || ||||| ||||||| Sbjct 2854 ACAGCGACACGCATAATCATGTGCTGTGGACGCTCGGCCACTT 2896 >seq1609 Length=13884 Score = 132 bits (146), Expect = 5e-26 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 ||||||| ||||| |||||||||| ||| | | |||||| ||||||||||| ||| ||| Sbjct 500 CCTTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGA 441 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||||||||| ||||| || || ||||| ||| || ||||| | | Sbjct 440 TCAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 381 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| |||| ||| | ||| || || || || ||||| |||| Sbjct 380 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTTTGACGA 321 Query 131225 A 131225 | Sbjct 320 A 320 >seq1188 Length=31586 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || ||||| |||||||||| ||| | | |||||| ||||||||||| ||| ||| Sbjct 1357 CCTTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGA 1416 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||||||||| ||||| || || ||||| ||| || ||||| | | Sbjct 1417 TCAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 1476 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| ||| |||| |||| || | ||| || || || || ||||| |||| Sbjct 1477 CGATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTTTGACGA 1536 Query 131225 A 131225 | Sbjct 1537 A 1537 >seq59 Length=11125 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || |||||||| || | || | || | || ||||||||||| || ||||| || Sbjct 4371 CCTCCGCGCAAGCGTAAGACCAGGTGGAGCGTGGACTCCTTTTGGATATTGTAGTCTGAG 4312 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | || |||||||| || ||| Sbjct 4311 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCAGGTGGG 4252 Query 131128 ATTCCTTCTTTGTCGGTGATTT 131149 |||||||| ||||| |||||| Sbjct 4251 ATTCCTTCCTTGTCTTTGATTT 4230 >seq1307 Length=69414 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | ||| | || || |||||||| |||||||| ||| Sbjct 38650 GCCACCACGGAGACGGAGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 38591 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||| || ||||||||||| ||| |||| | |||||| || || ||||| Sbjct 38590 GAGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGG 38531 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || |||||||| || || ||| | | || | || || | ||||| | Sbjct 38530 GATACCCTCTTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCCAC 38471 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 || | ||||| ||| || || || || || || |||| Sbjct 38470 CTCCAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGA 38433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472003023434880