Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1307 141 8e-29 >seq1307 Length=69414 Score = 141 bits (156), Expect = 8e-29 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| || || ||||||| ||||||| || || || Sbjct 38651 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACCATCACTCTCGAAGTAGAATCTTCA 38710 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || || || |||||||| || || || |||| Sbjct 38711 GACACAATCGA--CAATGTCAAGGCCAAGATACAAGATAAAGAAGGCATCCCCCCGGACC 38768 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || || |||||||||||||||||||||| ||||| | ||| |||| Sbjct 38769 AACAGCGCTTGATCTTCGCCGGCAAACAATTAGAAGATGGCCGCACACTCTCCGACTACA 38828 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || ||||||||||| |||||| | || || Sbjct 38829 ACATCCAGAAAGAATCCACCCTACATCTCGTCCT 38862 Score = 113 bits (124), Expect = 4e-20 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||||| || |||||||| | ||||| || ||||| Sbjct 38878 AATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACACTGGAAGTCGAATCGTC 38937 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || ||| || ||| ||||| || || || ||||| ||| Sbjct 38938 AGACACGATAGA--CAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCACCGGAC 38995 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG--CACTGTGGGCGATT 25173 |||||||| | || ||||| |||||||| | || |||| || |||||| | || | Sbjct 38996 CAACAGCGCCTGATCTTTGCAGGCAAACAGCTGGAGGATGGGCGGACACTGTCG--GACT 39053 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||| || || || || ||| || || || ||||| | || | |||||| Sbjct 39054 ACAACATCCAGAAGGAGAGCACCCTTCACTTGGTGCTGCGTCTGCGTGGAGGA 39106 Score = 100 bits (110), Expect = 2e-16 Identities = 131/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCAC-TGAAGCAAAAAATCACT 25091 ||||||| | || |||||||| || ||||| ||||| | || | ||| || ||| Sbjct 38177 CCATCACCCTTGAGGTGGAGTCCTCCGACACGATCGA-TAACGTCAAGGCCAAGATCCAG 38235 Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| ||||| || || |||||||| | || ||||| || || || | || Sbjct 38236 GACAAGGAAGGAATTCCCCCGGATCAACAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAG 38295 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || | |||||| || |||| ||||||||||| || || ||||| || || || || || Sbjct 38296 GACGGTCGCACCTTGAGCGACTACAATATTCAGAAGGAGTCCACTCTTCACTTGGTCCT 38354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433319249076455