Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1307 134 1e-26 seq59 89.7 4e-13 >seq1307 Length=69414 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || ||||||| ||||| ||| | | Sbjct 38651 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACCATCACTCTCGAAGTAGAATCTTCA 38710 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || ||||| || || || || || || || ||| Sbjct 38711 GACACAATCGACAATGTCAAGGCCAAGATACAAGATAAAGAAGGCATCCCCCCGGACCAA 38770 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||||||||| ||||| ||| |||||| ||||||| |||||| Sbjct 38771 CAGCGCTTGATCTTCGCCGGCAAACAATTAGAAGATGGCCGCACACTCTCCGACTACAAC 38830 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||||||||| ||||| | || | || ||||||| || Sbjct 38831 ATCCAGAAAGAATCCACCCTACATCTCGTCCTCCGTCTGCGCGGTGG 38877 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || ||||| ||| | | Sbjct 38879 ATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACACTGGAAGTCGAATCGTCA 38938 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || |||||||||||||| ||||| || ||| Sbjct 38939 GACACGATAGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAA 38998 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||||||| | |||||| || || | || || |||||| Sbjct 38999 CAGCGCCTGATCTTTGCAGGCAAACAGCTGGAGGATGGGCGGACACTGTCGGACTACAAC 39058 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||| | || || || |||| |||| ||||| Sbjct 39059 ATCCAGAAGGAGAGCACCCTTCACTTGGTGCTGCGTCTGCGTGGAGG 39105 Score = 105 bits (116), Expect = 6e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||| |||||||| || ||||||||||| ||||| || || |||||||| Sbjct 38507 AAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAACAGCGTCTCATCTTCGCCGGCAAG 38566 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | || || ||| || ||||||| |||||||| ||||| |||||||| Sbjct 38567 CAGCTCGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAAAGGAATCCAC 38619 >seq59 Length=11125 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 22304 AAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAAC 22363 |||| |||||||||| || || ||||| || || ||||| || || || || ||||| | Sbjct 4230 AAATCAAAGACAAGGAAGGAATCCCACCTGACCAGCAACGCCTGATCTTCGCGGGCAAGC 4289 Query 22364 AGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATT 22423 || | ||||| ||||| |||| || ||||| || ||||| || ||||| | || Sbjct 4290 AGCTCGAGGACGGTCGCACTCTCTCAGACTACAATATCCAAAAGGAGTCCACGCTCCACC 4349 Query 22424 TAGTTTTGCGATTGCGCGGAGG 22445 | || || || ||||||||||| Sbjct 4350 TGGTCTTACGCTTGCGCGGAGG 4371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419719523724205