Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq507 93.3 9e-14 seq1499 86.0 1e-11 >seq507 Length=66309 Score = 93.3 bits (102), Expect = 9e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || ||||| || ||||| |||||||||||||| || || |||| ||||| ||| | Sbjct 24221 AGTGGGCTCTCTATCAGGTGGCTGGAAGATGAAGCTTGCTCTGGCTCGTGCCATGCTAAT 24162 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCA 279793 | |||| |||||| | || ||||||||||| ||||| || Sbjct 24161 GGGTGCTGATGTCTTGCTCCTTGATGAGCCGACCAATCA 24123 >seq1499 Length=34637 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/163 (74%), Gaps = 8/163 (5%) Strand=Plus/Plus Query 252216 GTTCTCCATCACCATGCCATC-GCTGCCTGCAAAGAA-GCCAAGAATGGTCTTGATGAAG 252273 |||||| | || |||||||| | ||| || ||||| ||||||| | | ||||||| Sbjct 6425 GTTCTCGTTGACAATGCCATCAGATGCG-GCGAAGAATGCCAAGACGTG-CGAGATGAAG 6482 Query 252274 TGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--AA 252331 | |||||||||||||||||| ||| ||||||| || ||||| | ||||| || Sbjct 6483 TAACGCTCATCGTCGTTGAGTCTGTTGTTCCAGTCGTGAAGGTCCT--TGGAGAGGTCAA 6540 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 ||||| | |||||||| | || | | |||||||||||||| Sbjct 6541 TCTCTTCTGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 6583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027814978703537