Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1307 188 1e-42 seq1609 134 3e-26 seq1188 129 1e-24 seq59 116 7e-21 seq1502 93.3 8e-14 >seq1307 Length=69414 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| ||||| || || | || | ||||| ||||| ||||| |||||||| || |||| Sbjct 38879 TTCCACCGCGCAGACGGAGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGG 38820 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||||| | ||||||||||| || || |||||||| || | | |||||||| || | Sbjct 38819 AGAGTGTGCGGCCATCTTCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGG 38760 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | |||||||| || ||||| ||||| |||||||| ||||| ||||||| ||||||| Sbjct 38759 GGATGCCTTCTTTATCTTGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTA 38700 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | |||||||| || || || | |||||||||||| || ||||| Sbjct 38699 CTTCGAGAGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 Score = 156 bits (172), Expect = 8e-33 Identities = 152/196 (78%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || ||||| || ||||||||||| || |||||||| || | || ||||| | |||| Sbjct 38625 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGCTGC 38566 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || |||||||| ||||| | ||||| ||||| || || || || ||||| |||||||| Sbjct 38565 TTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCCTGAATCTTG 38506 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| || ||||||||||| | || || || |||| ||| ||||| || || || Sbjct 38505 GCCTTTACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTCTTGCCAGTC 38446 Query 68439 AGGGTCTTGACGAATA 68454 ||||||||||||| || Sbjct 38445 AGGGTCTTGACGACTA 38430 Score = 127 bits (140), Expect = 4e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | |||||||| || |||||||| || || || || || ||| Sbjct 38369 CCTCCACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCTC 38310 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || || || ||||| | ||||| || || ||| Sbjct 38309 AAGGTGCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGA 38250 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| ||||||||| ||||| ||||| | || || || Sbjct 38249 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGGACTCCACC 38190 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 38189 TCAAGGGTGATGGTCTTGCCAGTGA 38165 >seq1609 Length=13884 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 |||||||||||||||||| | |||||||| || || | |||||| || ||||| || Sbjct 498 TTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 439 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | || ||||| || || || || |||||||| || ||||| |||||||| ||| Sbjct 438 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 379 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| ||||| |||||||| Sbjct 378 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 320 >seq1188 Length=31586 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || ||||||||||||||| | |||||||| || || | |||||| || ||||| || Sbjct 1359 TTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 1418 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | || ||||| || || || || |||||||| || ||||| |||||||| ||| Sbjct 1419 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 1478 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | ||||| || || | |||||||| || ||||| ||||| |||||||| Sbjct 1479 ATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 1537 >seq59 Length=11125 Score = 116 bits (128), Expect = 7e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||||||||| | ||| || |||| ||| ||||||||||| |||||||| || || || || Sbjct 4372 TCCTCCGCGCAAGCGTAAGACCAGGTGGAGCGTGGACTCCTTTTGGATATTGTAGTCTGA 4313 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | || || || | |||||| || ||||| || || | ||| ||||| ||||| Sbjct 4312 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCAGGTGG 4253 Query 68354 AATGCCTTCCTTGTCTT 68370 || ||||||||||||| Sbjct 4252 GATTCCTTCCTTGTCTT 4236 >seq1502 Length=18032 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 195987 TTGATTGGGTCGTCTTTGACGAAATCCACTACATGTCCGACGATGCGCGTGGTACCGTGT 196046 ||| |||||||||||||||||||||||||||| || ||| | || ||||| || | Sbjct 11695 TTGGTTGGGTCGTCTTTGACGAAATCCACTACTTGAGAGACAAGGCACGTGGCGTGGTCT 11754 Query 196047 GGGAAGAAAGCCTTATCCTCATCCCGGATACCATCCGCTGTGTCTTTTTGTCCGCGACTG 196106 ||||||| | | ||| | | || || | | |||| |||||| |||| ||||| Sbjct 11755 GGGAAGAGACGATCATCTTGCTTCCAGACAAAGTTCGCTACGTCTTTCTGTCTGCGACGA 11814 Query 196107 TTCCCAACGCCCGTGACTTTGCCTTGTGGTTCTCGAAGATGCATTCGCACCCCGTGGATG 196166 | ||||| ||| | |||||| ||| || | |||| ||| ||||| || ||| | | Sbjct 11815 TCCCCAATGCCATGCAATTTGCCGAATGGATCACAAAGACGCACTCGCAGCCGGTGCACG 11874 Query 196167 TCTTCT 196172 || ||| Sbjct 11875 TCGTCT 11880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921603310896040