Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1307 105 6e-18 >seq1307 Length=69414 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || | ||| | || ||||| ||||| |||||||| ||| Sbjct 38652 ATGCCACCACGGAGACGGAGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCG 38593 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||||| || || || || ||| |||||||||||||||| || ||| Sbjct 38592 GAGAGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGA 38533 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || |||||||| |||||| |||| | || | |||||| | || || Sbjct 38532 GGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCC 38473 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || |||| ||| | || ||||| ||||| || || || Sbjct 38472 ACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 38435 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || || || ||||| ||||| ||| Sbjct 38372 ATGCCTCCACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCG 38313 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| || ||| || ||||| || || ||||| |||||||||||||||| ||||| Sbjct 38312 CTCAAGGTGCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGG 38253 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| || | | || | ||||||| ||| || Sbjct 38252 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGGACTCC 38193 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358 || || | ||| | || ||||| || Sbjct 38192 ACCTCAAGGGTGATGGTCTTGCCAGT 38167 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||||| || |||||||| || |||||||| ||| | || || |||||| | ||| Sbjct 38854 ATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCTAATTG 38795 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 ||| || ||| |||| | |||||||||||||| || ||||||||||| || ||||| Sbjct 38794 TTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGGATGCCTTCTTTATCTTGTATCTT 38735 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 || | | || | ||||| | ||||| || || | || | || ||||| || Sbjct 38734 GGCCTTGACATTGTCGATTGTGTCTGAAGATTCTACTTCGAGAGTGATGGTCTTGCCTGT 38675 Query 114359 CAGAGTTTTTACAAAAATCTGCATG 114383 || || || || || || |||||| Sbjct 38674 CAAGGTCTTGACGAAGATTTGCATG 38650 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| || || || || ||| || || ||||| || || || Sbjct 39069 TCCTTCTGGATGTTGTAGTCCGACAGTGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAG 39010 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || || |||||||||||||| || || || || ||||| ||||| || | | Sbjct 39009 ATCAGGCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTG 38950 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | ||||| | |||||||| |||| || | || || |||||||| || || ||| Sbjct 38949 TCTATCGTGTCTGACGATTCGACTTCCAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACA 38890 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 38889 AAGATCTGCAT 38879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420125915517084