Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq40 217 3e-51 seq1499 176 9e-39 >seq40 Length=17677 Score = 217 bits (240), Expect = 3e-51 Identities = 495/735 (67%), Gaps = 26/735 (4%) Strand=Plus/Plus Query 244970 GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATC 245029 |||||||| | | ||||||| || | | | ||| | || ||||||||| || |||||| Sbjct 2323 GGGCACATCAAAGTCCACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATC 2382 Query 245030 CAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAG 245088 || ||||| ||| || || | | | || ||| ||| ||| ||||||| || Sbjct 2383 CAAAGGGCAAAGAATAGATCTCGAGCGCGGACTTCTTCCTTGCC-GTGATTCTTCCGCAA 2441 Query 245089 CTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| || |||||||||||| | ||||| ||||| | ||| | |||| || ||||| Sbjct 2442 ATCCAGGAATTCAAAGACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGG 2501 Query 245149 CCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGG 245204 |||||||||||||| || || | | | || ||| |||||||| ||| || Sbjct 2502 ACGCTTGTTGCCTCCTTGATCGA----CATAGCGGGCGGTGTTGTTGAAGACGCGTAGCA 2557 Query 245205 TAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA 245264 |||| || ||||| || ||| ||| ||||||||| ||| || | ||| | | | | Sbjct 2558 TAGGAACAATGCCATTGGAGGAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAA 2617 Query 245265 GGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGA 245324 | | |||| || ||| | || ||||| ||| |||||||| || || | |||| Sbjct 2618 TGCGGTGGATGTTCAGGCCAATGCCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTGA 2677 Query 245325 TGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACA 245384 |||||| ||||| || || || ||| |||||||| || || ||||| ||||||| Sbjct 2678 GGGTGTCGTAGATGCCGTCGATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACA 2737 Query 245385 GCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGC 245444 ||| |||| ||| ||| | ||||||| || ||| |||||||| ||||| Sbjct 2738 TCTGAGGCTGTGGGGTGCCAGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCT 2797 Query 245445 TCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGG 245504 || | || ||| |||| || | ||||||||||||| |||| || || | Sbjct 2798 GAGACATGAGATGGTAGGTCTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAG 2857 Query 245505 CGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCTT------GA 245558 || | ||| | ||||||| || || | || | || | || || || Sbjct 2858 CGACACGCATAATCATGTGCTGTGG----ACGCTCGGCCACTTTG--CCATTGGTGCGGA 2911 Query 245559 GCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGT 245618 | | ||| || |||||||| ||||||||||||||||| |||| ||||| || || Sbjct 2912 GGAGGTATGATCGCTCGAGAGTCTTGAACCCAAAGTATTGGTAGTTGAAGTCTCGGTCGT 2971 Query 245619 GCCTGACGGCTGCGTCGAG-TCTCTCGGCGTGCTTC-TGACTGACCTCGTAAAACTTTTG 245676 || ||| | || ||| ||| |||||||||||| |||| | |||||| |||||| Sbjct 2972 AGACGATGGCCGAGTTGAGCTCT-TCGGCGTGCTTCATGAC-GGTCTCGTAGGTCTTTTG 3029 Query 245677 CGCTATGAGGGGAGC 245691 | ||| | ||| || Sbjct 3030 AGATATCATGGGGGC 3044 >seq1499 Length=34637 Score = 176 bits (194), Expect = 9e-39 Identities = 343/493 (70%), Gaps = 13/493 (3%) Strand=Plus/Minus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAG 42703 |||||||| |||||||| || ||||| | | | || | |||| || | | | | Sbjct 6189 AAGAAGGCCGACTGGGCTCTGCGATGGATAGCC-GACAAGAACTCAACTTTTGCCCAACG 6131 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 || || || ||| | || |||||||||||||||||||| ||| | || || || |||| Sbjct 6130 ACTTGTCGCTTTTGCTGCAGTCGAGGGCATCTTCTTCTCTGGCTCATTTGCATCGGTCTT 6071 Query 42764 CTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||| ||| || | ||| ||||||||| || ||||| || |||||||||||| Sbjct 6070 CTGGCTGAAGAAGCGTG-GTCTGATGCCCGGTCTGACCTTTTCCAACGAACTCATCTCGC 6012 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 |||| ||||| |||| | |||||||| || ||||||||||| ||||| | |||| Sbjct 6011 GGGATGAGGGAATGCACACTGACTTTGCTTGTCTCCTGTTCTC---ACACCTAAAGCACC 5955 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 ||| | || || | || | ||||||| || || || |||||| |||| | Sbjct 5954 GCCCCAGTCCGCAGGCCGTGCAGGACGTCATCACCGAAGCTGTCAGCATCGAGCAGGAAT 5895 Query 42943 TCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATG-TGCAA 43000 | | ||| || | | ||| ||| || | ||||||||| |||||||| |||| Sbjct 5894 TTTTGACGGAGGCTTTACCCTGTG-GTCTATTGGGCATGAACGCAAACCTCATGAAGCAA 5836 Query 43001 GTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGT-CTCAGCCGCCTCTACA 43059 |||||| | | ||| ||||||| || ||| | ||||| ||| | | |||| Sbjct 5835 -TACATCGAATTCGTGGCCGACCGACTGCTGCTCGCCTTGGGTAATCAAAAGTAT-TACA 5778 Query 43060 ACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTT 43119 | || || || || ||||| |||||| |||||| ||| |||||||||||| || | Sbjct 5777 AAGCGACGAATCCGTTTGACTTCATGGAGTCCATCTCTCTGGCGGGCAAGACCAATTTCT 5718 Query 43120 TCGAGAAGCGCGT 43132 | ||||| ||||| Sbjct 5717 TTGAGAAACGCGT 5705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944319640374320