Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1121 122 8e-23 >seq1121 Length=34987 Score = 122 bits (134), Expect = 8e-23 Identities = 205/297 (69%), Gaps = 1/297 (0%) Strand=Plus/Plus Query 20353 AGCT-ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCG 20411 |||| ||||||||||| || |||| ||||| || || | |||||| | | ||||| Sbjct 25781 AGCTGACATAAAATTGGCAAAACATATGACAAGGTGGTAAGGCCATCTTCTTTAGGTCCG 25840 Query 20412 CCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCA 20471 | || ||||| || | | ||||||||| || |||| || || ||||| | ||| | Sbjct 25841 CTGGATTCCATGCGCTGAGAATGATTCTCCTGTCGTAAGGCTTGTTTTTGAGCTTATCAA 25900 Query 20472 CAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACG 20531 | | | |||||| |||| ||| | || || || || | | || || || || Sbjct 25901 TGACCTCAGCCAATTGATCAACCCCTTTTCCGGTGTAATCRGTTTTGGCATCAACATATT 25960 Query 20532 CCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGT 20591 | ||||||||||| | ||||||||| ||||| || ||||| | ||||||| || || | Sbjct 25961 CGGCCCCAAAGTGTCGCCACTGGAAGCCGTAGACGGGTCCAAGATCCCCCACCTCCCTCT 26020 Query 20592 GCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGA 20648 ||| || || | | | || | || | |||||||| |||||||||||||| Sbjct 26021 GCGATAGACCTATGCTGTCAAGATATTCYCGAGAGCCATTGCCGTCCCATATCTTGA 26077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441363658065880