Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1307 172 1e-37 >seq1307 Length=69414 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | || |||||||| | ||| |||||| ||||| || ||||||| Sbjct 38878 TCCACCGCGCAGACGGAGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 38819 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || |||||||||||||| || |||||||||| |||||||| || Sbjct 38818 GAGTGTGCGGCCATCTTCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGG 38759 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||||||||| || || || || || || || || || | || |||||||| Sbjct 38758 GATGCCTTCTTTATCTTGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTAC 38699 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| ||||| ||||| || |||| ||||||||||| || ||||| Sbjct 38698 TTCGAGAGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || |||||||||| ||| ||| |||||||| || |||| Sbjct 38653 CATG-CCACCACGGAGACGGAGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGT 38595 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| || || |||||||| | || || || |||||||| |||||||||||| Sbjct 38594 CGGAGAGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGG 38535 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || ||||| ||||| || || || || || || || || | || || | Sbjct 38534 GAGGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACT 38475 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466 | || || || || || ||||| || ||||| |||||||||| || Sbjct 38474 CCACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGACTA 38430 Score = 91.5 bits (100), Expect = 3e-13 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| |||||| | ||||| ||||| || | || ||||| || ||| Sbjct 38333 TCCTTCTGAATATTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTTCCAGCAAAG 38274 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||||||||| ||| ||| |||||||| || |||||||| || || || ||| Sbjct 38273 ATGAGACGCTGTTG---ATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACG 38217 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 || || || | ||| || || || || || ||||| ||||| || || Sbjct 38216 TTATCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGT 38167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179629355568446