Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq507 95.1 3e-14 seq1499 89.7 1e-12 >seq507 Length=66309 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 333777 TCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATC 333836 ||||| ||| ||| |||||||||| ||||||||| || |||||||| || || ||| Sbjct 23997 TCGTAGTGGTAGATATCGGTGCAAACATTGTCGAGGAAACCAGAGTCGTGAGAGACGATC 24056 Query 333837 ACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACA 333896 | | ||| | || || | |||| ||||| ||||| | ||||| || Sbjct 24057 AAGGACGTGATTTCGGTATGAGACTTCAGATATTCTTCAAGCCATTTGACGTTCCCAACG 24116 Query 333897 GAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGT 333956 |||||| ||||||||||| ||||| || | | | || || ||||| ||||| Sbjct 24117 TCAAGATGATTGGTCGGCTCATCAAGGAGCAAGACATCAGCACCCATTAGCATGGCACGA 24176 Query 333957 GCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAG 333993 || ||||| || ||||| ||||| || ||||| |||| Sbjct 24177 GCCAGAGCAAGCTTCATCTTCCAGCCACCTGATAGAG 24213 >seq1499 Length=34637 Score = 89.7 bits (98), Expect = 1e-12 Identities = 166/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGC--GACGCTATTCCATGCCG 243560 ||||||| ||||| || | ||| ||||||| |||| || ||| | || || | Sbjct 5927 TCATCACCGAAGCTGTCAGCATCGAGCAGGAATT--TTTGACGGAGGCTTTACCCTGTGG 5870 Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 || | ||||||||| | | |||||| || |||||||||||||| |||||||| | Sbjct 5869 TCTATTGGGCATGAACGCAAACCTCATGAAGCAATACATCGAATTCGTGGCCGACCGACT 5810 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGT-ACAACTCCAAGAACCCCTTTGCCTTTATGG 243679 | |||| | ||| || | ||||| | |||| | | ||| || |||| ||| |||| Sbjct 5809 GCTGCTCGCCTTGGGTAATCA-AAAGTATTACAAAGCGACGAATCCGTTTGACTTCATGG 5751 Query 243680 AGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || ||| || || || || || || ||||| || || || || ||||||||||| Sbjct 5750 AGTCCATCTCTCTGGCGGGCAAGACCAATTTCTTTGAGAAACGCGTTGGTGATTATCAA 5692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102856585512950