Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq40 158 1e-33 seq1499 96.9 4e-15 >seq40 Length=17677 Score = 158 bits (174), Expect = 1e-33 Identities = 387/580 (67%), Gaps = 9/580 (2%) Strand=Plus/Plus Query 114737 TCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACA 114796 |||| || || || |||| | ||||| | | || ||| | |||| | || || Sbjct 2299 TCTGCAAGACCCGGAGCCTCGTTAGGGCACATCAAAGTCCACTCACCATTGGCTTCGACT 2358 Query 114797 CGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCT 114856 |||||||||||||| || |||||||| || || |||| ||||| ||| ||| ||||| Sbjct 2359 CGCTTCATGAAGAGATCCGGGATCCAAAGGGCAAAGAATAGATCTCGAGCGCGGACTTCT 2418 Query 114857 TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCC 114916 || | || ||||| ||||| |||| || || | || || || ||||| || || Sbjct 2419 TCCTTGCCGTGATTCTTCCGCAAATCCAGGAATTCAAAGACGTCGGCATGCCATGGCTCG 2478 Query 114917 AGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTG 114973 ||||||| |||| | || ||| || | || | ||||| | || ||| Sbjct 2479 AGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCCTCCTTGATCGACATAGCGGGCGGTG 2538 Query 114974 GCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-A 115031 || || ||||| ||||| |||| || |||| || |||||| || ||||||| | Sbjct 2539 TTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAGGAGCCATTGGTGCCCCCGATA 2598 Query 115032 TACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTG 115091 |||||| || | || | | ||||||| || ||||| || || || ||| | Sbjct 2599 TACGAGCCT--GTAGCGCGAATGCGGTGGATGTTCAGGCCAATGCCACCGGCAGTCTTCG 2656 Query 115092 AGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTG 115151 |||| | || ||| |||| || ||||||| |||||||| || |||| | Sbjct 2657 AGATGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGTCGATACTATCCTCCTTCATGT 2716 Query 115152 CGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTG 115211 |||| | |||||| ||||| || ||| ||| || ||||| ||||| | ||| || | Sbjct 2717 CGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCCAGCATTGAACAAGGTAGGGG 2776 Query 115212 TCGCGTGGATGAA-CATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATG 115270 ||||||| |||| || | || ||||| || ||||||||| | ||| | ||| Sbjct 2777 ACGCGTGGGTGAAGTATTTC-TGAGACATGAGATGGTAGGTCTCGATGACCTTGTCGATG 2835 Query 115271 TCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGT 115310 | || |||| ||||| | | ||| ||||||| ||||| Sbjct 2836 TTGTCGTCGTGTATACCCACAGCGACACGCATAATCATGT 2875 Score = 114 bits (126), Expect = 2e-20 Identities = 309/470 (66%), Gaps = 12/470 (3%) Strand=Plus/Plus Query 113565 TGAACTGAATGGGTCTCGCCTTGGC---CTTTGATCGGAGGTAGTACATCCCCGTCTTGA 113621 ||||||| ||||| |||| ||| | ||| || || |||||||| ||||| || | Sbjct 1074 TGAACTGGATGGG---CGCCGAGGCAGCCATTGTGCGCAGATAGTACATGCCCGTTTTCA 1130 Query 113622 GCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCA 113681 ||| ||||||| | | ||||||||| | | ||| | ||| || | || Sbjct 1131 AGCCCATCTTCCAGCCGGCGAAATGCATCGATGTTATCTTACCCATTGTGGGGTCCTTCA 1190 Query 113682 TGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAA 113741 || | ||||| |||||||||||||| ||| || || || || ||||| | Sbjct 1191 TGTGAATGTTCAAGGACTGGGATTGATCGATAAAGGCACCGCGGTCGGCGGCCATTTG-- 1248 Query 113742 TCACATCCTTCATCT---TGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTG 113798 |||| || || |||| ||||| || || ||||||| ||| || ||| | | Sbjct 1249 -CACAATCTGGCGCTGGCTGATCTCCCAGACCGTCTTGTAGAGCGACTTGATGTCAGCGG 1307 Query 113799 GGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCT 113858 |||| | ||| || |||||||| || || | || ||| | | |||||| | | Sbjct 1308 GGATGTTGGGGATGTTCTGGATGGATCCGCCGTCGGCGATGATGCGGTTCTTCATGTTGT 1367 Query 113859 TTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACT 113918 |||||||| || || | |||||||| | || |||||| || ||| | Sbjct 1368 CCGACCAGAGGCCCATATCGACGAGATCCTTGAGCAGCCAAGGATTGACGACCTGAAATT 1427 Query 113919 CACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGT 113978 | ||||| || || | ||| ||||| | ||||| || || ||||| ||||||| Sbjct 1428 CGCCCGCTAGCACACGACGGGAATATATATTCGAGGTGTAAGGTTCGAAGCATTCATTGT 1487 Query 113979 TACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGG 114028 | || | ||| |||| || ||||| ||||||||||| |||| ||| ||| Sbjct 1488 TGCCGAGGATCTGGGATGTCGAGGCCGTGGGCATGGGGGCCACGAGGAGG 1537 >seq1499 Length=34637 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | ||||| || || ||||||||||| || || ||| ||| || Sbjct 5984 GCAAAGTCAGTGTGCATTCCCTCATCCCGCGAGATGAGTTCGTTGGAAAAGGTCAGACCG 6043 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| |||||||||| |||||| | || |||||| || ||||||||||| Sbjct 6044 GGCATCAGACCACGCTTCTTCAGCCAGAAGACCGATGCAAATGAGCCAGAGAAGAAGATG 6103 Query 126167 CCCTCCAC 126174 ||||| || Sbjct 6104 CCCTCGAC 6111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597341227313560