Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1307 113 5e-20 seq59 93.3 4e-14 >seq1307 Length=69414 Score = 113 bits (124), Expect = 5e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| ||||| |||||||| || | || || || ||||| Sbjct 38634 AGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 38575 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | ||||| ||||| || |||||||| || || ||||| || Sbjct 38574 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCC 38515 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||||| || | || || | ||||| || | || | |||| Sbjct 38514 TGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTC 38455 Query 64412 TTGCCGGTCAAAGTTTTTACGA 64433 ||||| |||| || || |||| Sbjct 38454 TTGCCAGTCAGGGTCTTGACGA 38433 >seq59 Length=11125 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATC-TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 || |||||||| | |||| || || || | ||| || || ||||| || ||||| |||| Sbjct 4371 CCTCCGCGCAAGCGTAAG-ACCAGGTGGAGCGTGGACTCCTTTTGGATATTGTAGTCTGA 4313 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| |||| || ||||||||||| || | || || || |||||||| || || Sbjct 4312 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCAGGTGG 4253 Query 64336 AATTCCTTCTTTTTCTTGTATTT 64358 |||||||| || |||| |||| Sbjct 4252 GATTCCTTCCTTGTCTTTGATTT 4230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499634451107080