Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq40 152 5e-32 >seq40 Length=17677 Score = 152 bits (168), Expect = 5e-32 Identities = 399/606 (66%), Gaps = 2/606 (0%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| ||||| ||||| ||| || ||||||||| | ||||| Sbjct 2957 AACTACCAATACTTTGGGTTCAAGACTCTCGAGCGATCATACCTCCTCCGCACCAATGGC 2898 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | || ||||||| || || || || | ||||| ||||| | || || |||| | || Sbjct 2897 AAAGTGGCCGAGCGTCCACAGCACATGATTATGCGTGTCGCTGTGGGTATACACGACGAC 2838 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 |||| || || | | | | | |||| | || | ||| || Sbjct 2837 AACATCGACAAGGTCATCGAGACCTACCATCTCATGTCTCAGAAATACTTCACCCACGCG 2778 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 |||| ||| ||||||| || || ||||| ||| |||||||| || || ||| |||| Sbjct 2777 TCCCCTACCTTGTTCAATGCTGGCACCCCACAGCCTCAGATGTCCTCATGCTTCTTGATC 2718 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| || ||| ||| || | ||||| |||||| ||||| ||| Sbjct 2717 GAC-ATGAAGGAGGATAGTATCGACGGCATCTACGACACCCTCAAAACGTGTGCTCTCAT 2659 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || || || | | ||||| | | || || | || || || Sbjct 2658 CTCGAAGACTGCCGGTGGCATTGGCCTGAACATCCACCGCATTCGCGCTACAGGCTCGTA 2599 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| | || ||||||||| ||||||| ||| | || |||||||| || ||||||||||| Sbjct 2598 TATCGGGGGCACCAATGGCTCCTCCAATGGCATTGTTCCTATGCTACGCGTCTTCAACAA 2539 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || ||||| || || || || || | | | || ||||||| | || || Sbjct 2538 CACCGCCCGCTATGTCGATCAAGGAGGCAACAAGCGTCCCGGAGCTTTCGCCATGTACCT 2479 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||| ||||| || ||||| | ||| | || |||| ||||| |||||||| || Sbjct 2478 CGAGCCATGGCATGCCGACGTCTTTGAATTCCTGGATTTGCGGAAGAATCACGGCAAGGA 2419 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 | | || |||| || |||| || || ||| | || || || || ||||| || Sbjct 2418 AGAAGTCCGCGCTCGAGATCTATTCTTTGCCCTTTGGATCCCGGATCTCTTCATGAAGCG 2359 Query 94314 CGTCGA 94319 ||||| Sbjct 2358 AGTCGA 2353 Score = 140 bits (154), Expect = 3e-28 Identities = 240/345 (70%), Gaps = 10/345 (3%) Strand=Plus/Minus Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 ||| |||||||| || | || || ||||||||||||||||||||||| || | || Sbjct 1558 CAAGCACGGTGTTCGCAATTCCCTCCTCGTGGCCCCCATGCCCACGGCCTCGACATCCCA 1499 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 |||||| |||||||| || | |||||||| | |||||| || | || | | || || Sbjct 1498 GATCCTCGGCAACAATGAATGCTTCGAACCTTACACCTCGAATATATATTCCCGTCGTGT 1439 Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTG 95250 ||| || || ||||| | ||| |||| || || ||| || |||| | || Sbjct 1438 GCTAGCGGGCGAATTTCAGGTCGTCAATCCTTGGCTGCTCAAGGATCT--CGTCGATATG 1381 Query 95251 GGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGC---TCCGTCCAG 95307 || | ||| ||||| | ||||||| | | |||| ||||| ||| ||||| Sbjct 1380 GGCCTCTGGTCGGACAACATGAAGAACCGCATCAT---CGCCGACGGCGGATCCATCCAG 1324 Query 95308 AACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCG 95367 |||||||| | || || | ||||||||| ||||||||||||| || ||||||||| Sbjct 1323 AACATCCCCAACATCCCCGCTGACATCAAGTCGCTCTACAAGACGGTCTGGGAGATCAGC 1264 Query 95368 CAGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATC 95412 |||||| ||| | | || |||| |||||| |||| ||| Sbjct 1263 CAGCGCCAGATTGTGCAAATGGCCGCCGACCGCGGTGCCTTTATC 1219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494712953045720