Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1307 111 2e-19 seq40 104 2e-17 >seq1307 Length=69414 Score = 111 bits (122), Expect = 2e-19 Identities = 138/184 (75%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||||||| | |||||| ||| ||||| || || |||| Sbjct 38616 GATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCG 38557 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTA- 138538 |||| ||||||||||| || ||||| ||||| |||||||| ||| | || | |||| Sbjct 38556 AAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCC-TGAATCTTGGCCTTTAC 38498 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||||| | | |||||| | ||||||||||| | || | || || |||||||| || | Sbjct 38497 ATTGT-CGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTCT 38439 Query 138599 TTAC 138602 | || Sbjct 38438 TGAC 38435 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || || || | | | |||||| || ||||||||||| | Sbjct 39105 CCTCCACGCAGACGCAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 39046 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||||| || ||||| || | | |||| || |||||||||||||| || Sbjct 39045 AGTGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGGG 38986 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | ||||| | ||| || || Sbjct 38985 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTG-TCTATCGTGTCTGACGATTCGAC 38927 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || ||||| || || ||||| |||||||| Sbjct 38926 TTCCAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 38879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||| ||||||||||||| || || |||||| || || || || | | Sbjct 38336 GACTCCTTCTGAATATTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTTCCAGCA 38277 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||||||||| ||||| || || ||||| ||||| ||| || || | Sbjct 38276 AAGATGAGACGCTGTTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACG 38217 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 | || | ||||||| ||||||||||| | || | || || ||||| Sbjct 38216 TTATCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGT 38167 >seq40 Length=17677 Score = 104 bits (114), Expect = 2e-17 Identities = 404/632 (64%), Gaps = 5/632 (1%) Strand=Plus/Plus Query 153830 CTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGG 153889 ||| ||||| ||| |||||||| || || || || || || ||| || | || Sbjct 2265 CTCATACAGCGCCTCGAACTCGTCCCCATAAATATCTGCAAGACCCGGAGCCTCGTTAGG 2324 Query 153890 ACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCA 153949 ||||||| | |||| | | | ||| | ||| || |||||| |||||||| | ||| Sbjct 2325 GCACATCAAAGTCCACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATCCA 2384 Query 153950 GAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTT-CAGAT 154008 || || | | || || || || | || ||| ||| || | | | || || Sbjct 2385 AAGGGCAAAGAATAGATCTCGAGCGCGGACTTCTTCCTTGCCG-TGATTCTTCCGCAAAT 2443 Query 154009 TGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTAC 154068 || | | ||| |||||| ||||| || || | ||| | ||| | || || || Sbjct 2444 CCAGGAATTCAAAGACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGAC 2503 Query 154069 GCTTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTT 154125 |||| || || |||||||| | ||| | | |||||||||||||| | ||| || Sbjct 2504 GCTTGTTGCCTCCTTGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAA 2563 Query 154126 CCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGAT 154185 | | ||| | | || ||| ||||| ||| | ||| ||||| | | | Sbjct 2564 CAATGCCATTGGAGGAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGGT 2623 Query 154186 GCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCC 154245 | | ||| | ||||||||| ||| | ||| || ||| ||| || || || Sbjct 2624 GGATGTTCAGGCCAATGCCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTGAGGGTGT 2683 Query 154246 TGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCG 154305 ||||||||||||||| ||||| || | | ||| |||||| || || |||| || | Sbjct 2684 CGTAGATGCCGTCGATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAG 2743 Query 154306 GAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365 | | || || || || | ||| || |||||| || || ||| || || Sbjct 2744 GCTGTGGGGTGCCAGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGACA 2803 Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425 | | |||| || |||||| | | ||||| | ||| |||| || || | ||||| | Sbjct 2804 TGAGATGGTAGGTCTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGCGACAC 2863 Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGCGACT 154457 |||| | ||||||||| ||||| ||||| ||| Sbjct 2864 GCATAATCATGTGCTGTGGACGCTCGGCCACT 2895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496252121165040