Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1307 104 2e-17 >seq1307 Length=69414 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || | ||| ||||| || ||||| || |||||||| ||| | Sbjct 38877 CCACCGCGCAGACGGAGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAG 38818 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||||||||||||||| ||| | ||||| ||||||||||| || Sbjct 38817 AGTGTGCGGCCATCTTCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGG 38758 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || || ||| || ||| | || || || || | |||||| Sbjct 38757 ATGCCTTCTTTATCTTGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTACT 38698 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || ||||||| || || || || |||||||| Sbjct 38697 TCGAGAGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357384782580245