Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1499 123 2e-23 seq1609 98.7 9e-16 seq1307 95.1 1e-14 seq1188 84.2 2e-11 >seq1499 Length=34637 Score = 123 bits (136), Expect = 2e-23 Identities = 342/513 (67%), Gaps = 21/513 (4%) Strand=Plus/Minus Query 47079 CGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAA 47138 |||| |||||||| ||||| || | || | || | ||| ||| | ||| || Sbjct 6192 CGCAAGAAGGCCGACTGGGCTCTGCGATGGATAGCCGACAAGAACTCAACTTTTGCCCAA 6133 Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198 || | ||||||| || ||||||||| |||||||||| ||| ||||| || | Sbjct 6132 CGACTTGTCGCTTTTGCTGCAGTCGAGGGCATCTTCTTCTCTGGCTCATTTGCATCGGTC 6073 Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258 || | |||| | || | |||||||| || || ||| |||||| || |||||| Sbjct 6072 TTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAACTCATCTCG 6013 Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACA-ACAC-TAGAGT--CGA 47314 | || || || ||||||| ||||||| |||||| | | |||| || || || Sbjct 6012 CGGGATGAGGGAATGCACACTGACTTTGCTTGTCTCCTGTTCTCACACCTAAAGCACCGC 5953 Query 47315 TCAAAAGTTGGACGTGCCCA--CCGT-CAGCGACATGTTTGCCGAAGCCGTCGCCATTGA 47371 | | || | || |||| ||| ||| | | ||||||| ||| ||| || Sbjct 5952 CCCA---------GTCCGCAGGCCGTGCAG-GACGTCATCACCGAAGCTGTCAGCATCGA 5903 Query 47372 GATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGAT 47431 | ||| ||||| | |||||| | ||| | || |||| |||||||| | | || Sbjct 5902 GCAGGAATTTTTGACGGAGGCTTTACCCTGTGGTCTATTGGGCATGAACGCAAACCTCAT 5843 Query 47432 GAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGT-ATCCCAAGA 47490 || | ||||||||||| || |||||||| ||||| | || || || ||| ||| Sbjct 5842 GAAGCAATACATCGAATTCGTGGCCGACCGACTGCT-GCTCGCCTTGGGTAATCAAAAGT 5784 Query 47491 TTTACCACACCGA-GAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACC 47549 ||| || | ||| |||||| || || || ||| | ||| || || | |||||||||| Sbjct 5783 ATTA-CAAAGCGACGAATCCGTTTGACTTCATGGAGTCCATCTCTCTGGCGGGCAAGACC 5725 Query 47550 AACTTTTTCGAGAAGCGCGTCGGCGAATATAAA 47582 || || || ||||| ||||| || || ||| || Sbjct 5724 AATTTCTTTGAGAAACGCGTTGGTGATTATCAA 5692 >seq1609 Length=13884 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 ||||| || || ||||||| || || | || || ||||| || || ||| ||||| Sbjct 498 TTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 439 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| || || || || |||||||||||| ||| || ||||| | ||| Sbjct 438 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 379 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | |||||| | |||||| |||| ||| | || ||||| ||||| ||||| || || Sbjct 378 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 320 >seq1307 Length=69414 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| ||| || || | |||| |||||| || | || ||| || || || ||||| Sbjct 39111 TACTG-TCCTCCACGCAGACGCAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTA 39053 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || || || || ||| || |||||||| || || |||||| ||||| || || Sbjct 39052 GTCCGACAGTGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTC 38993 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059 || || || |||||||||||| ||| ||| ||||| | || | ||||| | Sbjct 38992 CGGTGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCTATCGTGTCTGACGA 38933 Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| | || | || || |||||||| || || ||||| |||||||| Sbjct 38932 TTCGACTTCCAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 38879 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || ||||||||||| |||| || |||||| || || Sbjct 38351 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCTCAAGGTGCGACCGTCCTCA 38292 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| |||||||| |||| | ||||| ||||| || || || || ||||||||| | Sbjct 38291 AGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGAATTCCTTCCTTGTCCTGG 38232 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| ||||| | ||| || || | ||| | || ||| Sbjct 38231 ATCTTGGCCTTGACGTTATCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTG 38172 Query 127085 CCGGT 127089 || || Sbjct 38171 CCAGT 38167 >seq1188 Length=31586 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || || ||||||| || || | || || ||||| || || ||| ||||| Sbjct 1359 TTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 1418 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| || || || || |||||||||||| ||| || ||||| | ||| Sbjct 1419 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 1478 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | |||||| | ||||| |||| || | || ||||| ||||| ||||| || || Sbjct 1479 ATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 1537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475490951189680