Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1307 118 1e-21 seq1609 96.9 3e-15 seq1188 93.3 4e-14 >seq1307 Length=69414 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| || | | || ||||| || || ||||| || ||||| || || ||| Sbjct 38880 ATTCCACCGCGCAGACGGAGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCG 38821 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || |||||||| || ||| | ||||| || || |||||||| Sbjct 38820 GAGAGTGTGCGGCCATCTTCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGG 38761 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||||||||||||||| || || |||| || | ||||| ||||| || Sbjct 38760 GGGATGCCTTCTTTATCTTGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCT 38701 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| | || ||||| || | || || || || |||||||| Sbjct 38700 ACTTCGAGAGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 >seq1609 Length=13884 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 45151 CCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATA 45210 |||||||||| ||||||||||| | ||| | || || | || || || ||| | | Sbjct 500 CCTTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGA 441 Query 45211 TCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTT 45270 |||| || |||||||||||||| || || || || || || || || |||| | Sbjct 440 TCAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 381 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | ||||||||| |||||||| ||||| || | || ||||| || || ||||| || | Sbjct 380 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTTTGACGA 321 Query 45331 A 45331 | Sbjct 320 A 320 >seq1188 Length=31586 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 45151 CCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATA 45210 |||| ||||| ||||||||||| | ||| | || || | || || || ||| | | Sbjct 1357 CCTTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGA 1416 Query 45211 TCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTT 45270 |||| || |||||||||||||| || || || || || || || || |||| | Sbjct 1417 TCAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 1476 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | ||||||||| || ||||| |||||||| | || ||||| || || ||||| || | Sbjct 1477 CGATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTTTGACGA 1536 Query 45331 A 45331 | Sbjct 1537 A 1537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993837883720