Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq40 159 4e-34 seq1499 111 2e-19 >seq40 Length=17677 Score = 159 bits (176), Expect = 4e-34 Identities = 407/613 (66%), Gaps = 15/613 (2%) Strand=Plus/Plus Query 116668 TAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 || || ||||| ||||| || || | |||| || || || |||| | || || Sbjct 2269 TACAGCGCCTCGAACTCGTCCCCATAAATATCTGCAAGACCCGGAGCCTCGTTAGGGCAC 2328 Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787 | | || ||| | |||| | || || |||||||||||||| || |||||||| || Sbjct 2329 ATCAAAGTCCACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATCCAAAGG 2388 Query 116788 GCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 116847 || |||| ||||| ||| ||| ||||||| | || ||||| ||||| |||| Sbjct 2389 GCAAAGAATAGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAATCCAGG 2448 Query 116848 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG- 116906 || || | || || || ||||| || || ||||||| |||| | || | |||| Sbjct 2449 AATTCAAAGACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCC---GGGACGC 2505 Query 116907 -----ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATG 116961 || | || | ||||| | || || ||| || ||||| ||||| |||| Sbjct 2506 TTGTTGCCTCCTTGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACA 2565 Query 116962 ATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGT 117019 || |||| || |||||| || ||||||| ||||||| || | || | | || Sbjct 2566 ATGCCATTGGAGGAGCCATTGGTGCCCCCGATATACGAGCCT--GTAGCGCGAATGCGGT 2623 Query 117020 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGC 117079 |||||| || ||||| || || || ||| ||||| | || ||| |||| || Sbjct 2624 GGATGTTCAGGCCAATGCCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTGAGGGTGT 2683 Query 117080 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTG 117139 ||||||| || ||||| || |||| | |||| | |||||| ||||| || | Sbjct 2684 CGTAGATGCCGTCGATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAG 2743 Query 117140 GCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA-CATACCTTGGGAC 117198 || ||| || ||||| ||||| | ||| || | ||||||| |||| || | || ||| Sbjct 2744 GCTGTGGGGTGCCAGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTC-TGAGAC 2802 Query 117199 ATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACC 117258 || || ||||||||| | ||| | |||| || |||| ||||| | | ||| Sbjct 2803 ATGAGATGGTAGGTCTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGCGACA 2862 Query 117259 CGCATAAACATGT 117271 ||||||| ||||| Sbjct 2863 CGCATAATCATGT 2875 Score = 109 bits (120), Expect = 7e-19 Identities = 316/484 (65%), Gaps = 12/484 (2%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGC---CTTTGATCGGAGGTAGTACATCCCCGTCTTGA 115582 ||||||| ||||| |||| ||| | ||| || || |||||||| ||||| || | Sbjct 1074 TGAACTGGATGGG---CGCCGAGGCAGCCATTGTGCGCAGATAGTACATGCCCGTTTTCA 1130 Query 115583 GCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCA 115642 ||| ||||||| | | |||||| || | | ||| | ||| || | || Sbjct 1131 AGCCCATCTTCCAGCCGGCGAAATGCATCGATGTTATCTTACCCATTGTGGGGTCCTTCA 1190 Query 115643 TGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAA 115702 || | ||||| |||||||||||||| ||| || || || || ||||| | Sbjct 1191 TGTGAATGTTCAAGGACTGGGATTGATCGATAAAGGCACCGCGGTCGGCGGCCATTTG-- 1248 Query 115703 TCACATCCTTCATCT---TGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTG 115759 |||| || || |||| ||||| || || ||||||| ||| || ||| | | Sbjct 1249 -CACAATCTGGCGCTGGCTGATCTCCCAGACCGTCTTGTAGAGCGACTTGATGTCAGCGG 1307 Query 115760 GGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCT 115819 |||| | ||| || ||||| || || || | || ||| | | |||||| | | Sbjct 1308 GGATGTTGGGGATGTTCTGGATGGATCCGCCGTCGGCGATGATGCGGTTCTTCATGTTGT 1367 Query 115820 TTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACT 115879 |||||||| || || | |||||||| | || |||||| || ||| | Sbjct 1368 CCGACCAGAGGCCCATATCGACGAGATCCTTGAGCAGCCAAGGATTGACGACCTGAAATT 1427 Query 115880 CACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGT 115939 | ||||| || || | ||| || || | ||||| || || ||||| ||||||| Sbjct 1428 CGCCCGCTAGCACACGACGGGAATATATATTCGAGGTGTAAGGTTCGAAGCATTCATTGT 1487 Query 115940 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGA 115999 | || | ||| |||| ||| ||||| ||||||||||| |||| ||| ||| ||||| | Sbjct 1488 TGCCGAGGATCTGGGATGTCGAGGCCGTGGGCATGGGGGCCACGAGGAGGGAATTGCGAA 1547 Query 116000 GACC 116003 ||| Sbjct 1548 CACC 1551 >seq1499 Length=34637 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| | ||||| || || ||||||||||| || || ||| |||||| Sbjct 5983 AGCAAAGTCAGTGTGCATTCCCTCATCCCGCGAGATGAGTTCGTTGGAAAAGGTCAGACC 6042 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| ||||| |||||||||| |||||| | || ||||||||||||||||||||| Sbjct 6043 GGGCATCAGACCACGCTTCTTCAGCCAGAAGACCGATGCAAATGAGCCAGAGAAGAAGAT 6102 Query 127639 CCCCTCCAC 127647 ||||| || Sbjct 6103 GCCCTCGAC 6111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613494492732120